Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2886 and GFF2887 overlap by 4 nucleotides GFF2887 and GFF2888 are separated by 7 nucleotides GFF2888 and GFF2889 overlap by 8 nucleotides GFF2889 and GFF2890 overlap by 4 nucleotides
GFF2886 - Metallo-beta-lactamase superfamily protein PA0057, at 312,398 to 313,297
GFF2886
GFF2887 - Thioredoxin-like protein clustered with PA0057, at 313,294 to 314,025
GFF2887
GFF2888 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 314,033 to 314,737
GFF2888
GFF2889 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 314,730 to 315,491
GFF2889
GFF2890 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 315,488 to 316,486
GFF2890
Position (kb) 314
315 Strain fitness (log2 ratio) -2
-1
0
1
2 at 313.082 kb on + strand, within GFF2886 at 313.082 kb on + strand, within GFF2886 at 313.083 kb on - strand, within GFF2886 at 313.112 kb on + strand, within GFF2886 at 313.112 kb on + strand, within GFF2886 at 313.112 kb on + strand, within GFF2886 at 313.112 kb on + strand, within GFF2886 at 313.112 kb on + strand, within GFF2886 at 313.146 kb on - strand, within GFF2886 at 313.146 kb on - strand, within GFF2886 at 313.330 kb on + strand at 313.330 kb on + strand at 313.330 kb on + strand at 313.330 kb on + strand at 313.330 kb on + strand at 313.330 kb on + strand at 313.330 kb on + strand at 313.330 kb on + strand at 313.330 kb on + strand at 313.330 kb on + strand at 313.330 kb on + strand at 313.330 kb on + strand at 313.330 kb on + strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.331 kb on - strand at 313.360 kb on + strand at 313.360 kb on + strand at 313.360 kb on + strand at 313.360 kb on + strand at 313.360 kb on + strand at 313.361 kb on - strand at 313.361 kb on - strand at 313.361 kb on - strand at 313.361 kb on - strand at 313.361 kb on - strand at 313.480 kb on + strand, within GFF2887 at 313.481 kb on - strand, within GFF2887 at 313.481 kb on - strand, within GFF2887 at 313.540 kb on + strand, within GFF2887 at 313.540 kb on + strand, within GFF2887 at 313.540 kb on + strand, within GFF2887 at 313.541 kb on - strand, within GFF2887 at 313.541 kb on - strand, within GFF2887 at 313.541 kb on - strand, within GFF2887 at 313.541 kb on - strand, within GFF2887 at 313.541 kb on - strand, within GFF2887 at 313.672 kb on + strand, within GFF2887 at 313.672 kb on + strand, within GFF2887 at 313.672 kb on + strand, within GFF2887 at 313.672 kb on + strand, within GFF2887 at 313.673 kb on - strand, within GFF2887 at 313.799 kb on + strand, within GFF2887 at 313.800 kb on - strand, within GFF2887 at 313.800 kb on - strand, within GFF2887 at 313.800 kb on - strand, within GFF2887 at 313.800 kb on - strand, within GFF2887 at 313.998 kb on - strand at 313.998 kb on - strand at 314.394 kb on + strand, within GFF2888 at 314.394 kb on + strand, within GFF2888 at 314.394 kb on + strand, within GFF2888 at 314.395 kb on - strand, within GFF2888 at 314.395 kb on - strand, within GFF2888 at 314.718 kb on - strand at 314.718 kb on - strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.761 kb on + strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 314.762 kb on - strand at 315.041 kb on - strand, within GFF2889 at 315.603 kb on + strand, within GFF2890 at 315.603 kb on + strand, within GFF2890 at 315.604 kb on - strand, within GFF2890 at 315.673 kb on - strand, within GFF2890
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 313,082 + GFF2886 0.76 -0.6 313,082 + GFF2886 0.76 -1.1 313,083 - GFF2886 0.76 -0.3 313,112 + GFF2886 0.79 -1.9 313,112 + GFF2886 0.79 -1.0 313,112 + GFF2886 0.79 -0.2 313,112 + GFF2886 0.79 -0.9 313,112 + GFF2886 0.79 -0.6 313,146 - GFF2886 0.83 +0.3 313,146 - GFF2886 0.83 +0.0 313,330 + -0.4 313,330 + -0.3 313,330 + +1.0 313,330 + +0.3 313,330 + +0.2 313,330 + +1.9 313,330 + +0.2 313,330 + +0.0 313,330 + +0.3 313,330 + +0.9 313,330 + +0.0 313,330 + -2.2 313,330 + +0.4 313,331 - +0.4 313,331 - -0.4 313,331 - +0.5 313,331 - +0.4 313,331 - +0.1 313,331 - +0.3 313,331 - +0.0 313,331 - +1.9 313,331 - +1.0 313,331 - +0.8 313,331 - +0.4 313,331 - -0.9 313,331 - -0.4 313,331 - +0.5 313,331 - +0.1 313,331 - -1.2 313,331 - +0.6 313,360 + +0.2 313,360 + -1.3 313,360 + -0.8 313,360 + +0.4 313,360 + -0.4 313,361 - -0.1 313,361 - +0.1 313,361 - -1.0 313,361 - -0.1 313,361 - -0.6 313,480 + GFF2887 0.25 +0.2 313,481 - GFF2887 0.26 +1.2 313,481 - GFF2887 0.26 -0.6 313,540 + GFF2887 0.34 -1.3 313,540 + GFF2887 0.34 -1.5 313,540 + GFF2887 0.34 +0.3 313,541 - GFF2887 0.34 -0.7 313,541 - GFF2887 0.34 -0.8 313,541 - GFF2887 0.34 +0.0 313,541 - GFF2887 0.34 -0.7 313,541 - GFF2887 0.34 +0.2 313,672 + GFF2887 0.52 +1.2 313,672 + GFF2887 0.52 -0.7 313,672 + GFF2887 0.52 +1.3 313,672 + GFF2887 0.52 +0.4 313,673 - GFF2887 0.52 -0.7 313,799 + GFF2887 0.69 +0.5 313,800 - GFF2887 0.69 +0.2 313,800 - GFF2887 0.69 +0.6 313,800 - GFF2887 0.69 -0.5 313,800 - GFF2887 0.69 -0.3 313,998 - -0.9 313,998 - +0.1 314,394 + GFF2888 0.51 +1.6 314,394 + GFF2888 0.51 -0.7 314,394 + GFF2888 0.51 +0.8 314,395 - GFF2888 0.51 +0.4 314,395 - GFF2888 0.51 -0.3 314,718 - +0.3 314,718 - -0.6 314,761 + +0.9 314,761 + +0.5 314,761 + -0.3 314,761 + +0.3 314,761 + -0.1 314,761 + +0.9 314,762 - +0.7 314,762 - -0.3 314,762 - -0.5 314,762 - -0.4 314,762 - +0.9 314,762 - -0.8 314,762 - -0.6 314,762 - +0.5 315,041 - GFF2889 0.41 -0.2 315,603 + GFF2890 0.12 -0.5 315,603 + GFF2890 0.12 +0.8 315,604 - GFF2890 0.12 +0.3 315,673 - GFF2890 0.19 -0.9
Or see this region's nucleotide sequence