Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2827 and GFF2828 are separated by 120 nucleotides GFF2828 and GFF2829 are separated by 65 nucleotides GFF2829 and GFF2830 are separated by 55 nucleotides GFF2830 and GFF2831 are separated by 14 nucleotides
GFF2827 - Bacterioferritin (EC 1.16.3.1), at 255,613 to 256,089
GFF2827
GFF2828 - Uncharacterized protein CC_3059, at 256,210 to 256,854
GFF2828
GFF2829 - Uncharacterized protein CC_3060, at 256,920 to 257,420
GFF2829
GFF2830 - Uncharacterized protein CC_3061, at 257,476 to 258,285
GFF2830
GFF2831 - FAD:protein FMN transferase (EC 2.7.1.180) @ FAD:protein FMN transferase (EC 2.7.1.180), CC_3059-CC_3061-associated, at 258,300 to 259,304
GFF2831
Position (kb) 256
257
258 Strain fitness (log2 ratio) -2
-1
0
1
2 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.952 kb on + strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 255.953 kb on - strand, within GFF2827 at 256.057 kb on + strand at 256.057 kb on + strand at 256.057 kb on + strand at 256.057 kb on + strand at 256.057 kb on + strand at 256.057 kb on + strand at 256.057 kb on + strand at 256.057 kb on + strand at 256.057 kb on + strand at 256.058 kb on - strand at 256.058 kb on - strand at 256.058 kb on - strand at 256.058 kb on - strand at 256.058 kb on - strand at 256.058 kb on - strand at 256.058 kb on - strand at 256.058 kb on - strand at 256.058 kb on - strand at 256.058 kb on - strand at 256.058 kb on - strand at 256.058 kb on - strand at 256.058 kb on - strand at 256.087 kb on + strand at 256.087 kb on + strand at 256.087 kb on + strand at 256.087 kb on + strand at 256.087 kb on + strand at 256.087 kb on + strand at 256.088 kb on - strand at 256.088 kb on - strand at 256.088 kb on - strand at 256.088 kb on - strand at 256.088 kb on - strand at 256.088 kb on - strand at 256.100 kb on + strand at 256.100 kb on + strand at 256.100 kb on + strand at 256.101 kb on - strand at 256.101 kb on - strand at 256.101 kb on - strand at 256.101 kb on - strand at 256.101 kb on - strand at 256.101 kb on - strand at 256.138 kb on - strand at 256.145 kb on + strand at 256.145 kb on + strand at 256.145 kb on + strand at 256.145 kb on + strand at 256.145 kb on + strand at 256.145 kb on + strand at 256.145 kb on + strand at 256.145 kb on + strand at 256.145 kb on + strand at 256.145 kb on + strand at 256.146 kb on - strand at 256.146 kb on - strand at 256.146 kb on - strand at 256.146 kb on - strand at 256.146 kb on - strand at 256.146 kb on - strand at 256.146 kb on - strand at 256.146 kb on - strand at 256.149 kb on + strand at 256.150 kb on - strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.154 kb on + strand at 256.155 kb on - strand at 256.155 kb on - strand at 256.155 kb on - strand at 256.155 kb on - strand at 256.155 kb on - strand at 256.155 kb on - strand at 256.155 kb on - strand at 256.155 kb on - strand at 256.155 kb on - strand at 256.169 kb on - strand at 256.193 kb on + strand at 256.193 kb on + strand at 256.193 kb on + strand at 256.194 kb on - strand at 256.194 kb on - strand at 256.194 kb on - strand at 256.194 kb on - strand at 256.194 kb on - strand at 256.246 kb on + strand at 256.246 kb on + strand at 256.246 kb on + strand at 256.247 kb on - strand at 256.552 kb on + strand, within GFF2828 at 256.552 kb on + strand, within GFF2828 at 256.552 kb on + strand, within GFF2828 at 256.621 kb on + strand, within GFF2828 at 256.622 kb on - strand, within GFF2828 at 256.622 kb on - strand, within GFF2828 at 256.622 kb on - strand, within GFF2828 at 256.651 kb on + strand, within GFF2828 at 256.651 kb on + strand, within GFF2828 at 256.651 kb on + strand, within GFF2828 at 256.651 kb on + strand, within GFF2828 at 256.652 kb on - strand, within GFF2828 at 256.652 kb on - strand, within GFF2828 at 256.652 kb on - strand, within GFF2828 at 256.652 kb on - strand, within GFF2828 at 256.652 kb on - strand, within GFF2828 at 256.652 kb on - strand, within GFF2828 at 256.652 kb on - strand, within GFF2828 at 256.652 kb on - strand, within GFF2828 at 256.652 kb on - strand, within GFF2828 at 256.652 kb on - strand, within GFF2828 at 256.899 kb on + strand at 256.899 kb on + strand at 256.900 kb on - strand at 257.001 kb on + strand, within GFF2829 at 257.001 kb on + strand, within GFF2829 at 257.002 kb on - strand, within GFF2829 at 257.002 kb on - strand, within GFF2829 at 257.014 kb on - strand, within GFF2829 at 257.073 kb on + strand, within GFF2829 at 257.073 kb on + strand, within GFF2829 at 257.073 kb on + strand, within GFF2829 at 257.073 kb on + strand, within GFF2829 at 257.074 kb on - strand, within GFF2829 at 257.074 kb on - strand, within GFF2829 at 257.074 kb on - strand, within GFF2829 at 257.074 kb on - strand, within GFF2829 at 257.274 kb on + strand, within GFF2829 at 257.274 kb on + strand, within GFF2829 at 257.274 kb on + strand, within GFF2829 at 257.274 kb on + strand, within GFF2829 at 257.274 kb on + strand, within GFF2829 at 257.274 kb on + strand, within GFF2829 at 257.275 kb on - strand, within GFF2829 at 257.275 kb on - strand, within GFF2829 at 257.275 kb on - strand, within GFF2829 at 257.275 kb on - strand, within GFF2829 at 257.275 kb on - strand, within GFF2829 at 257.398 kb on + strand at 257.738 kb on + strand, within GFF2830 at 257.738 kb on + strand, within GFF2830 at 257.738 kb on + strand, within GFF2830 at 257.738 kb on + strand, within GFF2830 at 257.738 kb on + strand, within GFF2830 at 257.738 kb on + strand, within GFF2830 at 257.738 kb on + strand, within GFF2830 at 257.738 kb on + strand, within GFF2830 at 257.738 kb on + strand, within GFF2830 at 257.739 kb on - strand, within GFF2830 at 257.739 kb on - strand, within GFF2830 at 257.739 kb on - strand, within GFF2830 at 257.739 kb on - strand, within GFF2830 at 257.739 kb on - strand, within GFF2830 at 257.739 kb on - strand, within GFF2830 at 257.739 kb on - strand, within GFF2830 at 257.739 kb on - strand, within GFF2830 at 257.770 kb on + strand, within GFF2830 at 257.770 kb on + strand, within GFF2830 at 257.770 kb on + strand, within GFF2830 at 257.770 kb on + strand, within GFF2830 at 257.771 kb on - strand, within GFF2830 at 257.771 kb on - strand, within GFF2830 at 257.771 kb on - strand, within GFF2830 at 257.771 kb on - strand, within GFF2830 at 257.771 kb on - strand, within GFF2830 at 257.771 kb on - strand, within GFF2830 at 257.771 kb on - strand, within GFF2830 at 257.771 kb on - strand, within GFF2830 at 257.771 kb on - strand, within GFF2830 at 257.771 kb on - strand, within GFF2830 at 257.771 kb on - strand, within GFF2830 at 257.771 kb on - strand, within GFF2830 at 258.106 kb on + strand, within GFF2830 at 258.106 kb on + strand, within GFF2830 at 258.106 kb on + strand, within GFF2830 at 258.107 kb on - strand, within GFF2830 at 258.107 kb on - strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.187 kb on + strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.188 kb on - strand, within GFF2830 at 258.189 kb on - strand, within GFF2830 at 258.256 kb on + strand at 258.256 kb on + strand at 258.257 kb on - strand at 258.257 kb on - strand at 258.257 kb on - strand at 258.336 kb on + strand at 258.336 kb on + strand at 258.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 255,952 + GFF2827 0.71 -0.5 255,952 + GFF2827 0.71 +0.2 255,952 + GFF2827 0.71 +0.1 255,952 + GFF2827 0.71 -0.2 255,952 + GFF2827 0.71 +0.1 255,952 + GFF2827 0.71 -0.9 255,952 + GFF2827 0.71 -0.2 255,952 + GFF2827 0.71 -0.6 255,952 + GFF2827 0.71 -0.1 255,952 + GFF2827 0.71 -1.2 255,952 + GFF2827 0.71 -0.0 255,952 + GFF2827 0.71 -0.7 255,952 + GFF2827 0.71 +0.6 255,952 + GFF2827 0.71 -0.9 255,952 + GFF2827 0.71 -0.0 255,952 + GFF2827 0.71 -0.4 255,952 + GFF2827 0.71 -0.2 255,952 + GFF2827 0.71 -0.8 255,953 - GFF2827 0.71 +0.4 255,953 - GFF2827 0.71 -0.2 255,953 - GFF2827 0.71 +0.6 255,953 - GFF2827 0.71 -0.5 255,953 - GFF2827 0.71 +0.6 255,953 - GFF2827 0.71 -0.4 255,953 - GFF2827 0.71 -0.9 255,953 - GFF2827 0.71 +0.2 255,953 - GFF2827 0.71 -0.1 255,953 - GFF2827 0.71 -0.7 255,953 - GFF2827 0.71 -0.1 255,953 - GFF2827 0.71 +1.6 255,953 - GFF2827 0.71 +0.4 255,953 - GFF2827 0.71 -0.4 255,953 - GFF2827 0.71 -0.2 255,953 - GFF2827 0.71 -0.8 255,953 - GFF2827 0.71 -0.8 255,953 - GFF2827 0.71 -0.4 256,057 + -0.6 256,057 + -0.3 256,057 + -0.9 256,057 + -0.7 256,057 + -0.3 256,057 + -0.2 256,057 + +1.3 256,057 + -0.4 256,057 + -0.3 256,058 - +1.6 256,058 - +1.2 256,058 - -0.6 256,058 - -0.1 256,058 - -0.6 256,058 - -0.8 256,058 - +1.6 256,058 - +0.2 256,058 - +0.6 256,058 - -0.2 256,058 - +0.4 256,058 - +0.4 256,058 - +0.6 256,087 + -1.4 256,087 + +0.1 256,087 + +0.5 256,087 + -0.2 256,087 + +0.2 256,087 + -1.1 256,088 - -0.6 256,088 - -0.6 256,088 - -0.6 256,088 - +0.3 256,088 - -1.3 256,088 - -0.6 256,100 + -0.9 256,100 + -0.3 256,100 + -0.4 256,101 - -0.5 256,101 - -0.3 256,101 - +0.2 256,101 - -0.6 256,101 - +1.6 256,101 - +0.2 256,138 - +0.6 256,145 + -1.1 256,145 + +0.6 256,145 + +0.1 256,145 + +0.4 256,145 + +0.2 256,145 + -0.4 256,145 + +0.6 256,145 + +0.2 256,145 + -0.6 256,145 + -0.5 256,146 - -1.7 256,146 - +1.7 256,146 - +0.8 256,146 - -0.1 256,146 - -0.3 256,146 - +0.3 256,146 - +0.6 256,146 - +0.8 256,149 + +1.0 256,150 - -0.9 256,154 + -1.6 256,154 + -0.4 256,154 + -0.6 256,154 + -0.9 256,154 + +0.2 256,154 + +1.0 256,154 + +1.4 256,154 + +0.9 256,154 + -0.8 256,154 + -0.3 256,154 + +2.3 256,154 + -1.0 256,154 + +0.2 256,154 + +0.1 256,154 + +0.3 256,154 + -1.2 256,154 + -0.3 256,154 + +1.0 256,154 + -0.6 256,154 + -0.4 256,154 + +0.0 256,154 + -1.2 256,154 + -1.2 256,154 + -0.0 256,154 + -0.2 256,154 + -0.8 256,154 + -0.2 256,154 + -0.4 256,155 - -0.4 256,155 - +0.9 256,155 - -0.5 256,155 - -0.4 256,155 - +1.6 256,155 - -1.2 256,155 - +1.0 256,155 - +0.6 256,155 - -0.1 256,169 - -1.0 256,193 + +1.0 256,193 + -0.3 256,193 + -0.2 256,194 - -1.0 256,194 - +0.2 256,194 - +0.7 256,194 - +0.5 256,194 - -0.4 256,246 + -1.0 256,246 + +1.6 256,246 + -0.7 256,247 - -1.3 256,552 + GFF2828 0.53 +0.6 256,552 + GFF2828 0.53 -0.0 256,552 + GFF2828 0.53 -0.3 256,621 + GFF2828 0.64 -1.5 256,622 - GFF2828 0.64 +0.3 256,622 - GFF2828 0.64 -0.4 256,622 - GFF2828 0.64 +0.2 256,651 + GFF2828 0.68 -0.0 256,651 + GFF2828 0.68 -0.4 256,651 + GFF2828 0.68 -0.1 256,651 + GFF2828 0.68 -0.2 256,652 - GFF2828 0.69 -0.8 256,652 - GFF2828 0.69 -0.3 256,652 - GFF2828 0.69 +1.8 256,652 - GFF2828 0.69 -0.2 256,652 - GFF2828 0.69 +0.8 256,652 - GFF2828 0.69 -1.2 256,652 - GFF2828 0.69 -0.8 256,652 - GFF2828 0.69 +0.7 256,652 - GFF2828 0.69 -0.0 256,652 - GFF2828 0.69 -0.0 256,899 + -0.3 256,899 + -0.2 256,900 - -0.5 257,001 + GFF2829 0.16 -1.7 257,001 + GFF2829 0.16 +0.2 257,002 - GFF2829 0.16 +1.3 257,002 - GFF2829 0.16 -0.7 257,014 - GFF2829 0.19 -1.2 257,073 + GFF2829 0.31 +1.2 257,073 + GFF2829 0.31 -0.4 257,073 + GFF2829 0.31 -0.6 257,073 + GFF2829 0.31 +0.1 257,074 - GFF2829 0.31 +0.1 257,074 - GFF2829 0.31 -0.5 257,074 - GFF2829 0.31 -0.3 257,074 - GFF2829 0.31 -1.6 257,274 + GFF2829 0.71 -0.5 257,274 + GFF2829 0.71 +0.0 257,274 + GFF2829 0.71 -1.2 257,274 + GFF2829 0.71 -1.9 257,274 + GFF2829 0.71 -0.9 257,274 + GFF2829 0.71 -0.2 257,275 - GFF2829 0.71 -1.1 257,275 - GFF2829 0.71 -0.3 257,275 - GFF2829 0.71 -0.7 257,275 - GFF2829 0.71 +1.0 257,275 - GFF2829 0.71 -0.7 257,398 + -0.4 257,738 + GFF2830 0.32 +1.3 257,738 + GFF2830 0.32 +0.7 257,738 + GFF2830 0.32 -0.5 257,738 + GFF2830 0.32 -0.1 257,738 + GFF2830 0.32 +0.6 257,738 + GFF2830 0.32 +0.3 257,738 + GFF2830 0.32 -0.2 257,738 + GFF2830 0.32 -0.2 257,738 + GFF2830 0.32 -0.7 257,739 - GFF2830 0.32 -1.5 257,739 - GFF2830 0.32 -0.3 257,739 - GFF2830 0.32 -1.0 257,739 - GFF2830 0.32 +0.4 257,739 - GFF2830 0.32 +2.6 257,739 - GFF2830 0.32 -0.4 257,739 - GFF2830 0.32 -0.5 257,739 - GFF2830 0.32 -0.0 257,770 + GFF2830 0.36 +1.6 257,770 + GFF2830 0.36 +0.7 257,770 + GFF2830 0.36 -2.0 257,770 + GFF2830 0.36 -0.7 257,771 - GFF2830 0.36 +0.8 257,771 - GFF2830 0.36 +1.3 257,771 - GFF2830 0.36 +0.3 257,771 - GFF2830 0.36 -0.4 257,771 - GFF2830 0.36 -0.6 257,771 - GFF2830 0.36 -0.6 257,771 - GFF2830 0.36 -0.6 257,771 - GFF2830 0.36 +0.6 257,771 - GFF2830 0.36 -0.3 257,771 - GFF2830 0.36 -0.9 257,771 - GFF2830 0.36 -0.7 257,771 - GFF2830 0.36 -0.6 258,106 + GFF2830 0.78 +1.6 258,106 + GFF2830 0.78 -0.4 258,106 + GFF2830 0.78 -1.3 258,107 - GFF2830 0.78 -1.6 258,107 - GFF2830 0.78 -0.2 258,187 + GFF2830 0.88 -0.5 258,187 + GFF2830 0.88 +0.1 258,187 + GFF2830 0.88 -0.7 258,187 + GFF2830 0.88 -0.1 258,187 + GFF2830 0.88 -0.6 258,187 + GFF2830 0.88 +0.6 258,187 + GFF2830 0.88 -0.7 258,187 + GFF2830 0.88 -0.8 258,187 + GFF2830 0.88 -1.0 258,187 + GFF2830 0.88 -1.4 258,187 + GFF2830 0.88 -0.3 258,187 + GFF2830 0.88 -0.2 258,187 + GFF2830 0.88 -0.2 258,187 + GFF2830 0.88 -0.5 258,187 + GFF2830 0.88 -0.0 258,187 + GFF2830 0.88 +0.2 258,187 + GFF2830 0.88 -0.6 258,187 + GFF2830 0.88 -0.4 258,187 + GFF2830 0.88 -0.6 258,187 + GFF2830 0.88 -0.2 258,187 + GFF2830 0.88 -1.2 258,187 + GFF2830 0.88 -1.2 258,187 + GFF2830 0.88 -0.4 258,187 + GFF2830 0.88 -0.6 258,187 + GFF2830 0.88 +0.2 258,187 + GFF2830 0.88 -0.0 258,187 + GFF2830 0.88 -2.1 258,187 + GFF2830 0.88 -0.0 258,187 + GFF2830 0.88 +0.1 258,187 + GFF2830 0.88 -0.1 258,187 + GFF2830 0.88 +0.2 258,187 + GFF2830 0.88 -0.5 258,188 - GFF2830 0.88 +0.9 258,188 - GFF2830 0.88 -0.4 258,188 - GFF2830 0.88 -1.0 258,188 - GFF2830 0.88 -0.5 258,188 - GFF2830 0.88 -0.9 258,188 - GFF2830 0.88 -0.5 258,188 - GFF2830 0.88 +0.6 258,188 - GFF2830 0.88 +0.1 258,188 - GFF2830 0.88 -0.1 258,188 - GFF2830 0.88 -0.5 258,188 - GFF2830 0.88 +0.1 258,188 - GFF2830 0.88 -0.9 258,188 - GFF2830 0.88 -0.1 258,188 - GFF2830 0.88 +0.2 258,189 - GFF2830 0.88 -0.0 258,256 + +0.6 258,256 + +1.3 258,257 - -0.7 258,257 - -0.2 258,257 - -0.3 258,336 + +2.6 258,336 + -0.7 258,337 - -2.1
Or see this region's nucleotide sequence