Strain Fitness in Variovorax sp. SCN45 around GFF2792

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2790 and GFF2791 are separated by 116 nucleotidesGFF2791 and GFF2792 are separated by 6 nucleotidesGFF2792 and GFF2793 are separated by 109 nucleotides GFF2790 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 219,707 to 220,891 GFF2790 GFF2791 - hypothetical protein, at 221,008 to 221,343 GFF2791 GFF2792 - Chaperone protein ClpB (ATP-dependent unfoldase), at 221,350 to 223,971 GFF2792 GFF2793 - Tricarboxylate transport protein TctC, at 224,081 to 225,073 GFF2793 Position (kb) 221 222 223 224Strain fitness (log2 ratio) -2 -1 0 1 2at 220.383 kb on + strand, within GFF2790at 220.383 kb on + strand, within GFF2790at 220.383 kb on + strand, within GFF2790at 220.384 kb on - strand, within GFF2790at 220.384 kb on - strand, within GFF2790at 220.384 kb on - strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.458 kb on + strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.459 kb on - strand, within GFF2790at 220.495 kb on - strand, within GFF2790at 220.495 kb on - strand, within GFF2790at 220.515 kb on + strand, within GFF2790at 220.515 kb on + strand, within GFF2790at 220.515 kb on + strand, within GFF2790at 220.692 kb on + strand, within GFF2790at 220.692 kb on + strand, within GFF2790at 220.692 kb on + strand, within GFF2790at 220.693 kb on - strand, within GFF2790at 220.996 kb on + strandat 220.997 kb on - strandat 220.997 kb on - strandat 221.237 kb on + strand, within GFF2791at 221.238 kb on - strand, within GFF2791at 221.333 kb on - strandat 221.351 kb on + strandat 221.352 kb on - strandat 221.661 kb on + strand, within GFF2792at 221.661 kb on + strand, within GFF2792at 221.662 kb on - strand, within GFF2792at 221.662 kb on - strand, within GFF2792at 221.723 kb on + strand, within GFF2792at 221.723 kb on + strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.724 kb on - strand, within GFF2792at 221.982 kb on - strand, within GFF2792at 221.996 kb on + strand, within GFF2792at 221.997 kb on - strand, within GFF2792at 222.005 kb on + strand, within GFF2792at 222.005 kb on + strand, within GFF2792at 222.005 kb on + strand, within GFF2792at 222.471 kb on - strand, within GFF2792at 222.605 kb on + strand, within GFF2792at 222.605 kb on + strand, within GFF2792at 222.605 kb on + strand, within GFF2792at 222.605 kb on + strand, within GFF2792at 222.839 kb on + strand, within GFF2792at 222.839 kb on + strand, within GFF2792at 222.839 kb on + strand, within GFF2792at 222.839 kb on + strand, within GFF2792at 222.839 kb on + strand, within GFF2792at 222.839 kb on + strand, within GFF2792at 222.839 kb on + strand, within GFF2792at 222.839 kb on + strand, within GFF2792at 222.839 kb on + strand, within GFF2792at 222.839 kb on + strand, within GFF2792at 222.839 kb on + strand, within GFF2792at 222.840 kb on - strand, within GFF2792at 222.840 kb on - strand, within GFF2792at 222.840 kb on - strand, within GFF2792at 222.840 kb on - strand, within GFF2792at 222.840 kb on - strand, within GFF2792at 222.840 kb on - strand, within GFF2792at 222.908 kb on + strand, within GFF2792at 222.908 kb on + strand, within GFF2792at 222.908 kb on + strand, within GFF2792at 222.908 kb on + strand, within GFF2792at 222.908 kb on + strand, within GFF2792at 222.909 kb on - strand, within GFF2792at 222.909 kb on - strand, within GFF2792at 222.909 kb on - strand, within GFF2792at 222.909 kb on - strand, within GFF2792at 222.909 kb on - strand, within GFF2792at 222.909 kb on - strand, within GFF2792at 222.909 kb on - strand, within GFF2792at 222.909 kb on - strand, within GFF2792at 222.909 kb on - strand, within GFF2792at 223.013 kb on + strand, within GFF2792at 223.013 kb on + strand, within GFF2792at 223.013 kb on + strand, within GFF2792at 223.013 kb on + strand, within GFF2792at 223.013 kb on + strand, within GFF2792at 223.013 kb on + strand, within GFF2792at 223.014 kb on - strand, within GFF2792at 223.014 kb on - strand, within GFF2792at 223.014 kb on - strand, within GFF2792at 223.014 kb on - strand, within GFF2792at 223.014 kb on - strand, within GFF2792at 223.014 kb on - strand, within GFF2792at 223.014 kb on - strand, within GFF2792at 223.014 kb on - strand, within GFF2792at 223.321 kb on + strand, within GFF2792at 223.322 kb on - strand, within GFF2792at 223.335 kb on + strand, within GFF2792at 223.487 kb on + strand, within GFF2792at 223.487 kb on + strand, within GFF2792at 223.487 kb on + strand, within GFF2792at 223.488 kb on - strand, within GFF2792at 223.889 kb on + strandat 223.889 kb on + strandat 223.889 kb on + strandat 223.889 kb on + strandat 223.889 kb on + strandat 223.889 kb on + strandat 223.889 kb on + strandat 223.890 kb on - strandat 223.890 kb on - strandat 223.890 kb on - strandat 223.890 kb on - strandat 223.890 kb on - strandat 223.890 kb on - strandat 223.995 kb on - strandat 223.995 kb on - strandat 224.389 kb on - strand, within GFF2793at 224.391 kb on - strand, within GFF2793at 224.522 kb on + strand, within GFF2793at 224.522 kb on + strand, within GFF2793at 224.523 kb on - strand, within GFF2793at 224.523 kb on - strand, within GFF2793at 224.523 kb on - strand, within GFF2793at 224.523 kb on - strand, within GFF2793at 224.523 kb on - strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.625 kb on - strand, within GFF2793at 224.625 kb on - strand, within GFF2793at 224.625 kb on - strand, within GFF2793at 224.625 kb on - strand, within GFF2793at 224.625 kb on - strand, within GFF2793at 224.852 kb on + strand, within GFF2793at 224.852 kb on + strand, within GFF2793at 224.852 kb on + strand, within GFF2793at 224.852 kb on + strand, within GFF2793at 224.853 kb on - strand, within GFF2793at 224.853 kb on - strand, within GFF2793at 224.853 kb on - strand, within GFF2793at 224.855 kb on + strand, within GFF2793at 224.855 kb on + strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.903 kb on + strand, within GFF2793at 224.903 kb on + strand, within GFF2793at 224.903 kb on + strand, within GFF2793at 224.903 kb on + strand, within GFF2793at 224.904 kb on - strand, within GFF2793at 224.904 kb on - strand, within GFF2793at 224.904 kb on - strand, within GFF2793

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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220,383 + GFF2790 0.57 -1.3
220,383 + GFF2790 0.57 +0.3
220,383 + GFF2790 0.57 +0.2
220,384 - GFF2790 0.57 +0.0
220,384 - GFF2790 0.57 -0.0
220,384 - GFF2790 0.57 -0.0
220,458 + GFF2790 0.63 -0.5
220,458 + GFF2790 0.63 -0.4
220,458 + GFF2790 0.63 +0.2
220,458 + GFF2790 0.63 -0.3
220,459 - GFF2790 0.63 -0.0
220,459 - GFF2790 0.63 +0.0
220,459 - GFF2790 0.63 -0.8
220,459 - GFF2790 0.63 -0.3
220,459 - GFF2790 0.63 -0.3
220,495 - GFF2790 0.66 -0.5
220,495 - GFF2790 0.66 -0.8
220,515 + GFF2790 0.68 -0.9
220,515 + GFF2790 0.68 -0.6
220,515 + GFF2790 0.68 -0.5
220,692 + GFF2790 0.83 +0.5
220,692 + GFF2790 0.83 -0.4
220,692 + GFF2790 0.83 +1.8
220,693 - GFF2790 0.83 -0.9
220,996 + +0.4
220,997 - -0.4
220,997 - -0.9
221,237 + GFF2791 0.68 +0.3
221,238 - GFF2791 0.68 -1.2
221,333 - -0.8
221,351 + +0.6
221,352 - -0.0
221,661 + GFF2792 0.12 -1.4
221,661 + GFF2792 0.12 -1.1
221,662 - GFF2792 0.12 -0.3
221,662 - GFF2792 0.12 -1.2
221,723 + GFF2792 0.14 -0.4
221,723 + GFF2792 0.14 -0.3
221,724 - GFF2792 0.14 -0.2
221,724 - GFF2792 0.14 -1.8
221,724 - GFF2792 0.14 +0.2
221,724 - GFF2792 0.14 -0.2
221,724 - GFF2792 0.14 -0.7
221,982 - GFF2792 0.24 -1.4
221,996 + GFF2792 0.25 +0.2
221,997 - GFF2792 0.25 -1.4
222,005 + GFF2792 0.25 -0.8
222,005 + GFF2792 0.25 +0.5
222,005 + GFF2792 0.25 -1.0
222,471 - GFF2792 0.43 -0.6
222,605 + GFF2792 0.48 +0.6
222,605 + GFF2792 0.48 -0.6
222,605 + GFF2792 0.48 -0.6
222,605 + GFF2792 0.48 +0.5
222,839 + GFF2792 0.57 +1.0
222,839 + GFF2792 0.57 -0.5
222,839 + GFF2792 0.57 -0.9
222,839 + GFF2792 0.57 -1.2
222,839 + GFF2792 0.57 -0.2
222,839 + GFF2792 0.57 -1.8
222,839 + GFF2792 0.57 -0.8
222,839 + GFF2792 0.57 +1.6
222,839 + GFF2792 0.57 -1.4
222,839 + GFF2792 0.57 -0.8
222,839 + GFF2792 0.57 -0.5
222,840 - GFF2792 0.57 -1.6
222,840 - GFF2792 0.57 -0.6
222,840 - GFF2792 0.57 -1.0
222,840 - GFF2792 0.57 +0.6
222,840 - GFF2792 0.57 -1.4
222,840 - GFF2792 0.57 -0.3
222,908 + GFF2792 0.59 -0.9
222,908 + GFF2792 0.59 -0.0
222,908 + GFF2792 0.59 -0.0
222,908 + GFF2792 0.59 -0.4
222,908 + GFF2792 0.59 +0.6
222,909 - GFF2792 0.59 -0.6
222,909 - GFF2792 0.59 -1.2
222,909 - GFF2792 0.59 -1.1
222,909 - GFF2792 0.59 +0.6
222,909 - GFF2792 0.59 +0.8
222,909 - GFF2792 0.59 -0.7
222,909 - GFF2792 0.59 +0.8
222,909 - GFF2792 0.59 +0.2
222,909 - GFF2792 0.59 -0.4
223,013 + GFF2792 0.63 +0.7
223,013 + GFF2792 0.63 +0.6
223,013 + GFF2792 0.63 -1.1
223,013 + GFF2792 0.63 -0.8
223,013 + GFF2792 0.63 -0.8
223,013 + GFF2792 0.63 -0.9
223,014 - GFF2792 0.63 -0.8
223,014 - GFF2792 0.63 +0.3
223,014 - GFF2792 0.63 -0.3
223,014 - GFF2792 0.63 +0.2
223,014 - GFF2792 0.63 -1.8
223,014 - GFF2792 0.63 -0.6
223,014 - GFF2792 0.63 -0.4
223,014 - GFF2792 0.63 +0.5
223,321 + GFF2792 0.75 -1.0
223,322 - GFF2792 0.75 +0.1
223,335 + GFF2792 0.76 +1.2
223,487 + GFF2792 0.82 -1.1
223,487 + GFF2792 0.82 -0.8
223,487 + GFF2792 0.82 -0.4
223,488 - GFF2792 0.82 +0.3
223,889 + +1.4
223,889 + -0.2
223,889 + +0.4
223,889 + -1.8
223,889 + -0.4
223,889 + -1.2
223,889 + -0.0
223,890 - -0.7
223,890 - -0.4
223,890 - -0.2
223,890 - -0.2
223,890 - -0.4
223,890 - +0.2
223,995 - -0.3
223,995 - -0.0
224,389 - GFF2793 0.31 +0.2
224,391 - GFF2793 0.31 -0.8
224,522 + GFF2793 0.44 -0.2
224,522 + GFF2793 0.44 +1.6
224,523 - GFF2793 0.45 +0.7
224,523 - GFF2793 0.45 +0.7
224,523 - GFF2793 0.45 +0.0
224,523 - GFF2793 0.45 -0.6
224,523 - GFF2793 0.45 -0.5
224,624 + GFF2793 0.55 +0.7
224,624 + GFF2793 0.55 -0.5
224,624 + GFF2793 0.55 -1.4
224,624 + GFF2793 0.55 -0.5
224,624 + GFF2793 0.55 -0.4
224,624 + GFF2793 0.55 +0.7
224,624 + GFF2793 0.55 -0.3
224,624 + GFF2793 0.55 -0.3
224,624 + GFF2793 0.55 -0.5
224,624 + GFF2793 0.55 +0.1
224,624 + GFF2793 0.55 +0.2
224,625 - GFF2793 0.55 -0.0
224,625 - GFF2793 0.55 -0.8
224,625 - GFF2793 0.55 -1.0
224,625 - GFF2793 0.55 +0.8
224,625 - GFF2793 0.55 +0.7
224,852 + GFF2793 0.78 -1.3
224,852 + GFF2793 0.78 -1.2
224,852 + GFF2793 0.78 -1.2
224,852 + GFF2793 0.78 -0.5
224,853 - GFF2793 0.78 +0.4
224,853 - GFF2793 0.78 +0.6
224,853 - GFF2793 0.78 +1.6
224,855 + GFF2793 0.78 -0.3
224,855 + GFF2793 0.78 -0.0
224,856 - GFF2793 0.78 -0.0
224,856 - GFF2793 0.78 +0.3
224,856 - GFF2793 0.78 -0.3
224,856 - GFF2793 0.78 +0.3
224,856 - GFF2793 0.78 +0.1
224,856 - GFF2793 0.78 -1.5
224,856 - GFF2793 0.78 +0.1
224,903 + GFF2793 0.83 +1.2
224,903 + GFF2793 0.83 +0.4
224,903 + GFF2793 0.83 -0.5
224,903 + GFF2793 0.83 -1.1
224,904 - GFF2793 0.83 -0.2
224,904 - GFF2793 0.83 -0.9
224,904 - GFF2793 0.83 -1.6

Or see this region's nucleotide sequence