Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2687 and GFF2688 are separated by 122 nucleotides GFF2688 and GFF2689 are separated by 35 nucleotides GFF2689 and GFF2690 overlap by 4 nucleotides GFF2690 and GFF2691 are separated by 89 nucleotides
GFF2687 - Protein containing domains DUF404, DUF407, DUF403, at 115,041 to 117,776
GFF2687
GFF2688 - Glutamine ABC transporter, substrate-binding protein GlnH, at 117,899 to 118,723
GFF2688
GFF2689 - Protein containing transglutaminase-like domain, putative cysteine protease, at 118,759 to 119,715
GFF2689
GFF2690 - RidA/YER057c/UK114 superfamily, group 1, at 119,712 to 120,170
GFF2690
GFF2691 - no description, at 120,260 to 120,934
GFF2691
Position (kb) 118
119
120 Strain fitness (log2 ratio) -2
-1
0
1 at 118.289 kb on + strand, within GFF2688 at 118.290 kb on - strand, within GFF2688 at 118.530 kb on - strand, within GFF2688 at 118.679 kb on + strand at 118.679 kb on + strand at 118.691 kb on + strand at 118.692 kb on - strand at 118.795 kb on + strand at 118.927 kb on + strand, within GFF2689 at 119.131 kb on + strand, within GFF2689 at 119.131 kb on + strand, within GFF2689 at 119.231 kb on - strand, within GFF2689 at 119.272 kb on - strand, within GFF2689 at 119.371 kb on + strand, within GFF2689 at 119.536 kb on + strand, within GFF2689 at 119.537 kb on - strand, within GFF2689 at 119.537 kb on - strand, within GFF2689 at 119.537 kb on - strand, within GFF2689 at 119.564 kb on - strand, within GFF2689 at 119.591 kb on + strand, within GFF2689 at 119.592 kb on - strand, within GFF2689 at 119.782 kb on - strand, within GFF2690 at 119.851 kb on + strand, within GFF2690 at 120.217 kb on + strand at 120.217 kb on + strand at 120.218 kb on - strand at 120.360 kb on + strand, within GFF2691 at 120.361 kb on - strand, within GFF2691 at 120.361 kb on - strand, within GFF2691
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 118,289 + GFF2688 0.47 +0.7 118,290 - GFF2688 0.47 -1.8 118,530 - GFF2688 0.76 -0.3 118,679 + +0.3 118,679 + -0.4 118,691 + -0.3 118,692 - -0.4 118,795 + -0.1 118,927 + GFF2689 0.18 +0.1 119,131 + GFF2689 0.39 -0.4 119,131 + GFF2689 0.39 -0.5 119,231 - GFF2689 0.49 -0.8 119,272 - GFF2689 0.54 +0.4 119,371 + GFF2689 0.64 +0.7 119,536 + GFF2689 0.81 +0.4 119,537 - GFF2689 0.81 +1.7 119,537 - GFF2689 0.81 -0.2 119,537 - GFF2689 0.81 -0.1 119,564 - GFF2689 0.84 -0.1 119,591 + GFF2689 0.87 +0.6 119,592 - GFF2689 0.87 +0.2 119,782 - GFF2690 0.15 -0.1 119,851 + GFF2690 0.30 +1.6 120,217 + -0.1 120,217 + -0.8 120,218 - -0.0 120,360 + GFF2691 0.15 +0.3 120,361 - GFF2691 0.15 +0.7 120,361 - GFF2691 0.15 +0.3
Or see this region's nucleotide sequence