Strain Fitness in Variovorax sp. SCN45 around GFF2647

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2646 and GFF2647 are separated by 47 nucleotidesGFF2647 and GFF2648 are separated by 140 nucleotides GFF2646 - Acetyl-CoA acetyltransferase, at 59,129 to 60,313 GFF2646 GFF2647 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 60,361 to 61,920 GFF2647 GFF2648 - Transcriptional regulator, AraC family, at 62,061 to 63,095 GFF2648 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1at 59.403 kb on + strand, within GFF2646at 59.404 kb on - strand, within GFF2646at 59.404 kb on - strand, within GFF2646at 59.484 kb on + strand, within GFF2646at 59.484 kb on + strand, within GFF2646at 59.484 kb on + strand, within GFF2646at 59.485 kb on - strand, within GFF2646at 59.865 kb on + strand, within GFF2646at 60.117 kb on + strand, within GFF2646at 60.118 kb on - strand, within GFF2646at 60.118 kb on - strand, within GFF2646at 60.118 kb on - strand, within GFF2646at 60.165 kb on + strand, within GFF2646at 60.166 kb on - strand, within GFF2646at 60.454 kb on + strandat 60.479 kb on + strandat 60.479 kb on + strandat 60.479 kb on + strandat 60.479 kb on + strandat 60.480 kb on - strandat 60.480 kb on - strandat 60.526 kb on + strand, within GFF2647at 60.526 kb on + strand, within GFF2647at 60.526 kb on + strand, within GFF2647at 60.713 kb on + strand, within GFF2647at 60.713 kb on + strand, within GFF2647at 60.713 kb on + strand, within GFF2647at 60.714 kb on - strand, within GFF2647at 60.731 kb on + strand, within GFF2647at 60.731 kb on + strand, within GFF2647at 60.731 kb on + strand, within GFF2647at 60.731 kb on + strand, within GFF2647at 60.731 kb on + strand, within GFF2647at 60.732 kb on - strand, within GFF2647at 60.732 kb on - strand, within GFF2647at 60.732 kb on - strand, within GFF2647at 60.732 kb on - strand, within GFF2647at 60.732 kb on - strand, within GFF2647at 60.800 kb on + strand, within GFF2647at 60.899 kb on + strand, within GFF2647at 60.900 kb on - strand, within GFF2647at 60.900 kb on - strand, within GFF2647at 60.900 kb on - strand, within GFF2647at 61.082 kb on + strand, within GFF2647at 61.082 kb on + strand, within GFF2647at 61.082 kb on + strand, within GFF2647at 61.083 kb on - strand, within GFF2647at 61.316 kb on + strand, within GFF2647at 61.316 kb on + strand, within GFF2647at 61.316 kb on + strand, within GFF2647at 61.317 kb on - strand, within GFF2647at 61.427 kb on + strand, within GFF2647at 61.427 kb on + strand, within GFF2647at 61.428 kb on - strand, within GFF2647at 61.428 kb on - strand, within GFF2647at 61.428 kb on - strand, within GFF2647at 61.490 kb on - strand, within GFF2647at 61.541 kb on + strand, within GFF2647at 61.541 kb on + strand, within GFF2647at 61.542 kb on - strand, within GFF2647at 61.542 kb on - strand, within GFF2647at 61.542 kb on - strand, within GFF2647at 61.646 kb on + strand, within GFF2647at 61.647 kb on - strand, within GFF2647at 61.647 kb on - strand, within GFF2647at 61.647 kb on - strand, within GFF2647at 61.721 kb on + strand, within GFF2647at 61.721 kb on + strand, within GFF2647at 61.722 kb on - strand, within GFF2647at 61.826 kb on + strandat 61.826 kb on + strandat 61.916 kb on + strandat 61.916 kb on + strandat 61.916 kb on + strandat 61.916 kb on + strandat 61.917 kb on - strandat 61.917 kb on - strandat 61.917 kb on - strandat 61.917 kb on - strandat 61.917 kb on - strandat 61.917 kb on - strandat 61.959 kb on + strandat 61.959 kb on + strandat 62.229 kb on + strand, within GFF2648at 62.229 kb on + strand, within GFF2648at 62.230 kb on - strand, within GFF2648at 62.230 kb on - strand, within GFF2648at 62.514 kb on + strand, within GFF2648at 62.514 kb on + strand, within GFF2648at 62.514 kb on + strand, within GFF2648at 62.592 kb on + strand, within GFF2648at 62.722 kb on + strand, within GFF2648

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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59,403 + GFF2646 0.23 -0.0
59,404 - GFF2646 0.23 +0.2
59,404 - GFF2646 0.23 -1.0
59,484 + GFF2646 0.30 +0.4
59,484 + GFF2646 0.30 -0.1
59,484 + GFF2646 0.30 -0.2
59,485 - GFF2646 0.30 -0.3
59,865 + GFF2646 0.62 -0.5
60,117 + GFF2646 0.83 -0.8
60,118 - GFF2646 0.83 -0.3
60,118 - GFF2646 0.83 +0.4
60,118 - GFF2646 0.83 -1.4
60,165 + GFF2646 0.87 +0.1
60,166 - GFF2646 0.88 -0.5
60,454 + +0.2
60,479 + -0.9
60,479 + +0.1
60,479 + -1.2
60,479 + -0.5
60,480 - -0.6
60,480 - -1.3
60,526 + GFF2647 0.11 -0.0
60,526 + GFF2647 0.11 +0.7
60,526 + GFF2647 0.11 -1.0
60,713 + GFF2647 0.23 +0.7
60,713 + GFF2647 0.23 +0.1
60,713 + GFF2647 0.23 -0.4
60,714 - GFF2647 0.23 +0.2
60,731 + GFF2647 0.24 +0.0
60,731 + GFF2647 0.24 -0.4
60,731 + GFF2647 0.24 +0.2
60,731 + GFF2647 0.24 -0.0
60,731 + GFF2647 0.24 -1.3
60,732 - GFF2647 0.24 +1.0
60,732 - GFF2647 0.24 -0.6
60,732 - GFF2647 0.24 -0.2
60,732 - GFF2647 0.24 +1.6
60,732 - GFF2647 0.24 -1.1
60,800 + GFF2647 0.28 -0.1
60,899 + GFF2647 0.34 -0.7
60,900 - GFF2647 0.35 -0.4
60,900 - GFF2647 0.35 +0.5
60,900 - GFF2647 0.35 -0.5
61,082 + GFF2647 0.46 -0.9
61,082 + GFF2647 0.46 -0.4
61,082 + GFF2647 0.46 -0.8
61,083 - GFF2647 0.46 -0.9
61,316 + GFF2647 0.61 +1.1
61,316 + GFF2647 0.61 -0.0
61,316 + GFF2647 0.61 -0.4
61,317 - GFF2647 0.61 -0.1
61,427 + GFF2647 0.68 -0.3
61,427 + GFF2647 0.68 -0.8
61,428 - GFF2647 0.68 -2.1
61,428 - GFF2647 0.68 -1.0
61,428 - GFF2647 0.68 +0.7
61,490 - GFF2647 0.72 -0.5
61,541 + GFF2647 0.76 -0.9
61,541 + GFF2647 0.76 -1.0
61,542 - GFF2647 0.76 -1.4
61,542 - GFF2647 0.76 -0.8
61,542 - GFF2647 0.76 +0.3
61,646 + GFF2647 0.82 -0.7
61,647 - GFF2647 0.82 -2.6
61,647 - GFF2647 0.82 -0.9
61,647 - GFF2647 0.82 -0.2
61,721 + GFF2647 0.87 -0.1
61,721 + GFF2647 0.87 +0.0
61,722 - GFF2647 0.87 +0.6
61,826 + -1.0
61,826 + -0.3
61,916 + +1.0
61,916 + -0.4
61,916 + +0.3
61,916 + +0.6
61,917 - -0.2
61,917 - -1.4
61,917 - -0.2
61,917 - -0.3
61,917 - +0.6
61,917 - +0.5
61,959 + -0.4
61,959 + -0.0
62,229 + GFF2648 0.16 -0.5
62,229 + GFF2648 0.16 -0.0
62,230 - GFF2648 0.16 -0.3
62,230 - GFF2648 0.16 -0.4
62,514 + GFF2648 0.44 -0.8
62,514 + GFF2648 0.44 +0.2
62,514 + GFF2648 0.44 +0.2
62,592 + GFF2648 0.51 -0.9
62,722 + GFF2648 0.64 -0.6

Or see this region's nucleotide sequence