Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2549 and GFF2550 are separated by 7 nucleotides GFF2550 and GFF2551 overlap by 4 nucleotides GFF2551 and GFF2552 are separated by 73 nucleotides
GFF2549 - Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23), at 611,935 to 613,740
GFF2549
GFF2550 - Dihydroneopterin triphosphate pyrophosphohydrolase type 2, at 613,748 to 614,224
GFF2550
GFF2551 - Endonuclease/exonuclease/phosphatase, at 614,221 to 614,988
GFF2551
GFF2552 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 615,062 to 615,793
GFF2552
Position (kb) 613
614
615 Strain fitness (log2 ratio) -2
-1
0
1 at 614.007 kb on - strand, within GFF2550 at 614.007 kb on - strand, within GFF2550 at 614.015 kb on + strand, within GFF2550 at 614.016 kb on - strand, within GFF2550 at 614.016 kb on - strand, within GFF2550 at 614.148 kb on - strand, within GFF2550 at 614.269 kb on + strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.464 kb on + strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.476 kb on + strand, within GFF2551 at 614.476 kb on + strand, within GFF2551 at 614.477 kb on - strand, within GFF2551 at 614.779 kb on + strand, within GFF2551 at 614.780 kb on - strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.881 kb on + strand, within GFF2551 at 614.881 kb on + strand, within GFF2551 at 614.930 kb on + strand at 614.930 kb on + strand at 614.982 kb on + strand at 615.049 kb on + strand at 615.050 kb on - strand at 615.050 kb on - strand at 615.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 614,007 - GFF2550 0.54 -1.0 614,007 - GFF2550 0.54 -0.3 614,015 + GFF2550 0.56 -1.1 614,016 - GFF2550 0.56 -0.4 614,016 - GFF2550 0.56 +0.3 614,148 - GFF2550 0.84 -1.0 614,269 + +0.8 614,269 + -0.2 614,269 + -1.3 614,269 + +1.2 614,269 + -0.1 614,269 + -0.7 614,269 + +0.7 614,269 + -0.4 614,270 - -0.7 614,270 - -1.2 614,270 - -0.8 614,270 - +1.6 614,270 - -0.2 614,270 - -1.8 614,270 - +0.5 614,270 - +0.3 614,270 - -0.2 614,464 + GFF2551 0.32 +0.3 614,465 - GFF2551 0.32 +0.0 614,465 - GFF2551 0.32 +0.8 614,465 - GFF2551 0.32 +0.3 614,465 - GFF2551 0.32 +0.0 614,465 - GFF2551 0.32 -0.6 614,465 - GFF2551 0.32 -0.6 614,465 - GFF2551 0.32 -1.3 614,465 - GFF2551 0.32 +0.0 614,476 + GFF2551 0.33 -1.6 614,476 + GFF2551 0.33 -0.4 614,477 - GFF2551 0.33 +0.3 614,779 + GFF2551 0.73 -1.0 614,780 - GFF2551 0.73 +0.0 614,842 + GFF2551 0.81 -0.3 614,842 + GFF2551 0.81 -0.8 614,842 + GFF2551 0.81 -0.5 614,842 + GFF2551 0.81 -0.4 614,842 + GFF2551 0.81 -0.4 614,842 + GFF2551 0.81 -0.3 614,842 + GFF2551 0.81 -0.6 614,843 - GFF2551 0.81 -0.6 614,843 - GFF2551 0.81 +0.1 614,843 - GFF2551 0.81 +0.9 614,843 - GFF2551 0.81 -0.2 614,843 - GFF2551 0.81 -1.3 614,843 - GFF2551 0.81 -0.1 614,843 - GFF2551 0.81 -0.4 614,843 - GFF2551 0.81 -0.9 614,843 - GFF2551 0.81 +0.2 614,881 + GFF2551 0.86 +0.9 614,881 + GFF2551 0.86 +0.4 614,930 + -0.0 614,930 + -0.9 614,982 + -0.5 615,049 + -0.9 615,050 - -1.0 615,050 - -1.2 615,050 - +0.0
Or see this region's nucleotide sequence