Strain Fitness in Variovorax sp. SCN45 around GFF2494

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2492 and GFF2493 are separated by 12 nucleotidesGFF2493 and GFF2494 are separated by 95 nucleotidesGFF2494 and GFF2495 are separated by 19 nucleotides GFF2492 - BUG/TctC family periplasmic protein, at 551,151 to 552,131 GFF2492 GFF2493 - YheO-like PAS domain, at 552,144 to 552,770 GFF2493 GFF2494 - Threonine-synthase-like protein 4, at 552,866 to 554,014 GFF2494 GFF2495 - Ornithine cyclodeaminase (EC 4.3.1.12), at 554,034 to 555,020 GFF2495 Position (kb) 552 553 554 555Strain fitness (log2 ratio) -1 0 1at 552.146 kb on - strandat 552.146 kb on - strandat 552.160 kb on + strandat 552.160 kb on + strandat 552.160 kb on + strandat 552.160 kb on + strandat 552.161 kb on - strandat 552.161 kb on - strandat 552.466 kb on + strand, within GFF2493at 552.467 kb on - strand, within GFF2493at 552.467 kb on - strand, within GFF2493at 552.467 kb on - strand, within GFF2493at 552.538 kb on + strand, within GFF2493at 552.538 kb on + strand, within GFF2493at 552.538 kb on + strand, within GFF2493at 552.538 kb on + strand, within GFF2493at 552.539 kb on - strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.643 kb on + strand, within GFF2493at 552.644 kb on - strand, within GFF2493at 552.644 kb on - strand, within GFF2493at 552.644 kb on - strand, within GFF2493at 552.644 kb on - strand, within GFF2493at 552.644 kb on - strand, within GFF2493at 552.644 kb on - strand, within GFF2493at 552.783 kb on - strandat 552.891 kb on - strandat 553.087 kb on + strand, within GFF2494at 553.088 kb on - strand, within GFF2494at 553.088 kb on - strand, within GFF2494at 553.088 kb on - strand, within GFF2494at 553.088 kb on - strand, within GFF2494at 553.128 kb on - strand, within GFF2494at 553.313 kb on + strand, within GFF2494at 553.313 kb on + strand, within GFF2494at 553.313 kb on + strand, within GFF2494at 553.313 kb on + strand, within GFF2494at 553.313 kb on + strand, within GFF2494at 553.314 kb on - strand, within GFF2494at 553.397 kb on + strand, within GFF2494at 553.398 kb on - strand, within GFF2494at 553.398 kb on - strand, within GFF2494at 553.430 kb on + strand, within GFF2494at 553.430 kb on + strand, within GFF2494at 553.430 kb on + strand, within GFF2494at 553.431 kb on - strand, within GFF2494at 553.484 kb on + strand, within GFF2494at 553.857 kb on - strand, within GFF2494at 554.013 kb on - strandat 554.013 kb on - strandat 554.516 kb on + strand, within GFF2495at 554.516 kb on + strand, within GFF2495at 554.516 kb on + strand, within GFF2495at 554.517 kb on - strand, within GFF2495at 554.517 kb on - strand, within GFF2495at 554.517 kb on - strand, within GFF2495at 554.517 kb on - strand, within GFF2495at 554.517 kb on - strand, within GFF2495at 554.517 kb on - strand, within GFF2495at 554.517 kb on - strand, within GFF2495at 554.518 kb on + strand, within GFF2495at 554.518 kb on + strand, within GFF2495at 554.518 kb on + strand, within GFF2495at 554.518 kb on + strand, within GFF2495at 554.519 kb on - strand, within GFF2495at 554.519 kb on - strand, within GFF2495at 554.519 kb on - strand, within GFF2495at 554.519 kb on - strand, within GFF2495at 554.519 kb on - strand, within GFF2495at 554.519 kb on - strand, within GFF2495at 554.519 kb on - strand, within GFF2495

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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552,146 - -0.6
552,146 - -0.6
552,160 + -0.1
552,160 + +0.3
552,160 + -0.5
552,160 + -0.7
552,161 - +0.1
552,161 - +0.3
552,466 + GFF2493 0.51 -0.1
552,467 - GFF2493 0.52 +0.2
552,467 - GFF2493 0.52 -0.3
552,467 - GFF2493 0.52 +1.2
552,538 + GFF2493 0.63 -1.2
552,538 + GFF2493 0.63 +0.2
552,538 + GFF2493 0.63 -0.6
552,538 + GFF2493 0.63 -0.0
552,539 - GFF2493 0.63 +0.4
552,643 + GFF2493 0.80 +0.1
552,643 + GFF2493 0.80 +0.9
552,643 + GFF2493 0.80 +0.1
552,643 + GFF2493 0.80 +0.1
552,643 + GFF2493 0.80 +0.0
552,643 + GFF2493 0.80 -0.6
552,643 + GFF2493 0.80 -1.7
552,644 - GFF2493 0.80 +1.2
552,644 - GFF2493 0.80 -0.4
552,644 - GFF2493 0.80 -0.7
552,644 - GFF2493 0.80 +0.1
552,644 - GFF2493 0.80 -0.1
552,644 - GFF2493 0.80 -0.1
552,783 - -0.1
552,891 - -0.1
553,087 + GFF2494 0.19 -0.0
553,088 - GFF2494 0.19 +0.0
553,088 - GFF2494 0.19 -0.2
553,088 - GFF2494 0.19 -0.4
553,088 - GFF2494 0.19 +1.0
553,128 - GFF2494 0.23 -0.9
553,313 + GFF2494 0.39 -1.5
553,313 + GFF2494 0.39 -1.2
553,313 + GFF2494 0.39 +0.2
553,313 + GFF2494 0.39 -0.8
553,313 + GFF2494 0.39 -1.7
553,314 - GFF2494 0.39 +1.1
553,397 + GFF2494 0.46 -0.4
553,398 - GFF2494 0.46 -0.4
553,398 - GFF2494 0.46 -0.6
553,430 + GFF2494 0.49 -0.1
553,430 + GFF2494 0.49 +0.0
553,430 + GFF2494 0.49 +0.0
553,431 - GFF2494 0.49 +1.0
553,484 + GFF2494 0.54 -1.2
553,857 - GFF2494 0.86 -0.5
554,013 - +0.5
554,013 - +0.3
554,516 + GFF2495 0.49 -0.7
554,516 + GFF2495 0.49 -0.2
554,516 + GFF2495 0.49 -0.9
554,517 - GFF2495 0.49 -0.7
554,517 - GFF2495 0.49 +0.8
554,517 - GFF2495 0.49 +0.0
554,517 - GFF2495 0.49 +0.6
554,517 - GFF2495 0.49 +1.6
554,517 - GFF2495 0.49 -0.6
554,517 - GFF2495 0.49 -1.4
554,518 + GFF2495 0.49 -1.0
554,518 + GFF2495 0.49 -1.1
554,518 + GFF2495 0.49 -0.8
554,518 + GFF2495 0.49 -0.4
554,519 - GFF2495 0.49 -0.7
554,519 - GFF2495 0.49 -1.3
554,519 - GFF2495 0.49 -0.5
554,519 - GFF2495 0.49 -0.4
554,519 - GFF2495 0.49 -0.2
554,519 - GFF2495 0.49 -0.7
554,519 - GFF2495 0.49 +0.5

Or see this region's nucleotide sequence