Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2423 and GFF2424 overlap by 4 nucleotides GFF2424 and GFF2425 overlap by 4 nucleotides GFF2425 and GFF2426 are separated by 33 nucleotides
GFF2423 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 474,255 to 475,046
GFF2423
GFF2424 - ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron), at 475,043 to 475,894
GFF2424
GFF2425 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 475,891 to 476,982
GFF2425
GFF2426 - ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron), at 477,016 to 478,050
GFF2426
Position (kb) 475
476
477 Strain fitness (log2 ratio) -1
0
1
2 at 474.931 kb on + strand, within GFF2423 at 474.932 kb on - strand, within GFF2423 at 475.170 kb on + strand, within GFF2424 at 475.170 kb on + strand, within GFF2424 at 475.170 kb on + strand, within GFF2424 at 475.194 kb on + strand, within GFF2424 at 475.195 kb on - strand, within GFF2424 at 475.195 kb on - strand, within GFF2424 at 475.339 kb on - strand, within GFF2424 at 475.626 kb on + strand, within GFF2424 at 475.626 kb on + strand, within GFF2424 at 475.626 kb on + strand, within GFF2424 at 475.626 kb on + strand, within GFF2424 at 475.627 kb on - strand, within GFF2424 at 475.627 kb on - strand, within GFF2424 at 475.627 kb on - strand, within GFF2424 at 475.627 kb on - strand, within GFF2424 at 475.627 kb on - strand, within GFF2424 at 475.630 kb on - strand, within GFF2424 at 475.630 kb on - strand, within GFF2424 at 475.710 kb on + strand, within GFF2424 at 475.713 kb on + strand, within GFF2424 at 475.713 kb on + strand, within GFF2424 at 475.713 kb on + strand, within GFF2424 at 475.714 kb on - strand, within GFF2424 at 475.737 kb on + strand, within GFF2424 at 475.738 kb on - strand, within GFF2424 at 475.738 kb on - strand, within GFF2424 at 475.738 kb on - strand, within GFF2424 at 475.783 kb on - strand, within GFF2424 at 475.928 kb on + strand at 475.928 kb on + strand at 475.928 kb on + strand at 475.928 kb on + strand at 475.929 kb on - strand at 475.929 kb on - strand at 475.929 kb on - strand at 475.929 kb on - strand at 475.929 kb on - strand at 475.929 kb on - strand at 475.929 kb on - strand at 476.042 kb on + strand, within GFF2425 at 476.042 kb on + strand, within GFF2425 at 476.043 kb on - strand, within GFF2425 at 476.318 kb on + strand, within GFF2425 at 476.319 kb on - strand, within GFF2425 at 476.319 kb on - strand, within GFF2425 at 477.428 kb on + strand, within GFF2426 at 477.639 kb on - strand, within GFF2426 at 477.674 kb on + strand, within GFF2426 at 477.675 kb on - strand, within GFF2426 at 477.794 kb on + strand, within GFF2426
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 474,931 + GFF2423 0.85 -0.6 474,932 - GFF2423 0.85 +2.2 475,170 + GFF2424 0.15 +0.3 475,170 + GFF2424 0.15 -0.0 475,170 + GFF2424 0.15 +0.0 475,194 + GFF2424 0.18 -0.1 475,195 - GFF2424 0.18 -0.5 475,195 - GFF2424 0.18 +0.2 475,339 - GFF2424 0.35 -0.2 475,626 + GFF2424 0.68 -0.5 475,626 + GFF2424 0.68 +0.5 475,626 + GFF2424 0.68 -0.8 475,626 + GFF2424 0.68 -0.9 475,627 - GFF2424 0.69 +0.7 475,627 - GFF2424 0.69 -1.2 475,627 - GFF2424 0.69 -1.4 475,627 - GFF2424 0.69 -0.1 475,627 - GFF2424 0.69 -0.5 475,630 - GFF2424 0.69 +0.0 475,630 - GFF2424 0.69 -0.7 475,710 + GFF2424 0.78 -0.4 475,713 + GFF2424 0.79 +0.0 475,713 + GFF2424 0.79 +0.8 475,713 + GFF2424 0.79 -0.9 475,714 - GFF2424 0.79 +0.0 475,737 + GFF2424 0.81 -0.4 475,738 - GFF2424 0.82 +0.2 475,738 - GFF2424 0.82 -0.7 475,738 - GFF2424 0.82 -0.8 475,783 - GFF2424 0.87 -0.3 475,928 + -0.3 475,928 + -1.0 475,928 + +0.0 475,928 + +0.1 475,929 - +0.8 475,929 - +0.0 475,929 - -0.8 475,929 - +0.2 475,929 - +0.3 475,929 - -0.1 475,929 - -1.0 476,042 + GFF2425 0.14 +0.9 476,042 + GFF2425 0.14 +1.8 476,043 - GFF2425 0.14 +0.2 476,318 + GFF2425 0.39 +0.3 476,319 - GFF2425 0.39 +0.2 476,319 - GFF2425 0.39 +1.0 477,428 + GFF2426 0.40 -0.8 477,639 - GFF2426 0.60 -1.0 477,674 + GFF2426 0.64 +0.0 477,675 - GFF2426 0.64 -0.2 477,794 + GFF2426 0.75 -0.5
Or see this region's nucleotide sequence