Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2265 and GFF2266 are separated by 5 nucleotides GFF2266 and GFF2267 are separated by 90 nucleotides GFF2267 and GFF2268 are separated by 100 nucleotides GFF2268 and GFF2269 are separated by 70 nucleotides
GFF2265 - Catechol 1,2-dioxygenase (EC 1.13.11.1), at 320,523 to 321,356
GFF2265
GFF2266 - FIG00441126: hypothetical protein, at 321,362 to 321,967
GFF2266
GFF2267 - Integral membrane protein, at 322,058 to 322,816
GFF2267
GFF2268 - Protein of unknown function DUF1428, at 322,917 to 323,276
GFF2268
GFF2269 - Uncharacterized MFS-type transporter, at 323,347 to 324,813
GFF2269
Position (kb) 322
323 Strain fitness (log2 ratio) -2
-1
0
1
2 at 321.093 kb on + strand, within GFF2265 at 321.195 kb on + strand, within GFF2265 at 321.506 kb on + strand, within GFF2266 at 321.506 kb on + strand, within GFF2266 at 321.689 kb on + strand, within GFF2266 at 321.690 kb on - strand, within GFF2266 at 321.746 kb on + strand, within GFF2266 at 321.746 kb on + strand, within GFF2266 at 321.746 kb on + strand, within GFF2266 at 321.747 kb on - strand, within GFF2266 at 321.747 kb on - strand, within GFF2266 at 321.845 kb on + strand, within GFF2266 at 321.845 kb on + strand, within GFF2266 at 321.845 kb on + strand, within GFF2266 at 321.846 kb on - strand, within GFF2266 at 321.846 kb on - strand, within GFF2266 at 321.846 kb on - strand, within GFF2266 at 321.846 kb on - strand, within GFF2266 at 321.846 kb on - strand, within GFF2266 at 321.846 kb on - strand, within GFF2266 at 321.846 kb on - strand, within GFF2266 at 321.846 kb on - strand, within GFF2266 at 321.846 kb on - strand, within GFF2266 at 321.846 kb on - strand, within GFF2266 at 321.920 kb on + strand at 321.966 kb on - strand at 322.008 kb on + strand at 322.085 kb on + strand at 322.085 kb on + strand at 322.086 kb on - strand at 322.086 kb on - strand at 322.086 kb on - strand at 322.091 kb on + strand at 322.091 kb on + strand at 322.092 kb on - strand at 322.092 kb on - strand at 322.535 kb on + strand, within GFF2267 at 322.535 kb on + strand, within GFF2267 at 322.535 kb on + strand, within GFF2267 at 322.535 kb on + strand, within GFF2267 at 322.535 kb on + strand, within GFF2267 at 322.536 kb on - strand, within GFF2267 at 322.536 kb on - strand, within GFF2267 at 322.536 kb on - strand, within GFF2267 at 322.536 kb on - strand, within GFF2267 at 322.536 kb on - strand, within GFF2267 at 322.536 kb on - strand, within GFF2267 at 322.536 kb on - strand, within GFF2267 at 322.536 kb on - strand, within GFF2267 at 322.586 kb on + strand, within GFF2267 at 322.586 kb on + strand, within GFF2267 at 322.586 kb on + strand, within GFF2267 at 322.587 kb on - strand, within GFF2267 at 322.587 kb on - strand, within GFF2267 at 322.748 kb on + strand at 322.749 kb on - strand at 322.749 kb on - strand at 322.797 kb on - strand at 322.807 kb on + strand at 322.808 kb on - strand at 322.808 kb on - strand at 322.808 kb on - strand at 322.808 kb on - strand at 323.056 kb on + strand, within GFF2268 at 323.056 kb on + strand, within GFF2268 at 323.056 kb on + strand, within GFF2268 at 323.056 kb on + strand, within GFF2268 at 323.056 kb on + strand, within GFF2268 at 323.056 kb on + strand, within GFF2268 at 323.057 kb on - strand, within GFF2268 at 323.057 kb on - strand, within GFF2268 at 323.057 kb on - strand, within GFF2268 at 323.057 kb on - strand, within GFF2268 at 323.057 kb on - strand, within GFF2268 at 323.161 kb on + strand, within GFF2268 at 323.161 kb on + strand, within GFF2268 at 323.162 kb on - strand, within GFF2268 at 323.177 kb on - strand, within GFF2268 at 323.262 kb on + strand at 323.262 kb on + strand at 323.262 kb on + strand at 323.262 kb on + strand at 323.262 kb on + strand at 323.263 kb on - strand at 323.266 kb on + strand at 323.266 kb on + strand at 323.266 kb on + strand at 323.267 kb on - strand at 323.267 kb on - strand at 323.267 kb on - strand at 323.489 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 321,093 + GFF2265 0.68 -0.8 321,195 + GFF2265 0.81 +0.3 321,506 + GFF2266 0.24 -0.5 321,506 + GFF2266 0.24 -0.3 321,689 + GFF2266 0.54 +0.4 321,690 - GFF2266 0.54 -0.1 321,746 + GFF2266 0.63 -0.3 321,746 + GFF2266 0.63 +0.1 321,746 + GFF2266 0.63 -1.2 321,747 - GFF2266 0.64 -0.3 321,747 - GFF2266 0.64 -0.3 321,845 + GFF2266 0.80 -0.5 321,845 + GFF2266 0.80 -0.3 321,845 + GFF2266 0.80 -0.1 321,846 - GFF2266 0.80 +1.9 321,846 - GFF2266 0.80 +1.1 321,846 - GFF2266 0.80 +0.2 321,846 - GFF2266 0.80 -0.2 321,846 - GFF2266 0.80 -0.9 321,846 - GFF2266 0.80 +0.3 321,846 - GFF2266 0.80 -0.1 321,846 - GFF2266 0.80 -0.0 321,846 - GFF2266 0.80 +0.2 321,846 - GFF2266 0.80 -0.3 321,920 + -1.3 321,966 - -0.8 322,008 + +0.1 322,085 + -0.2 322,085 + +0.5 322,086 - -0.4 322,086 - -0.3 322,086 - +0.2 322,091 + -0.2 322,091 + +0.2 322,092 - +0.2 322,092 - -0.4 322,535 + GFF2267 0.63 -0.1 322,535 + GFF2267 0.63 +0.7 322,535 + GFF2267 0.63 -1.7 322,535 + GFF2267 0.63 -0.7 322,535 + GFF2267 0.63 -0.6 322,536 - GFF2267 0.63 -1.8 322,536 - GFF2267 0.63 -0.1 322,536 - GFF2267 0.63 -0.5 322,536 - GFF2267 0.63 +2.2 322,536 - GFF2267 0.63 -0.9 322,536 - GFF2267 0.63 -1.2 322,536 - GFF2267 0.63 -1.3 322,536 - GFF2267 0.63 -0.8 322,586 + GFF2267 0.70 +0.8 322,586 + GFF2267 0.70 -1.7 322,586 + GFF2267 0.70 +0.3 322,587 - GFF2267 0.70 +0.8 322,587 - GFF2267 0.70 -0.5 322,748 + +1.2 322,749 - -0.5 322,749 - -0.7 322,797 - -0.4 322,807 + +1.0 322,808 - +0.1 322,808 - -0.3 322,808 - -0.2 322,808 - -0.3 323,056 + GFF2268 0.39 -0.5 323,056 + GFF2268 0.39 -1.4 323,056 + GFF2268 0.39 -0.5 323,056 + GFF2268 0.39 +0.5 323,056 + GFF2268 0.39 -1.2 323,056 + GFF2268 0.39 +0.5 323,057 - GFF2268 0.39 -0.2 323,057 - GFF2268 0.39 -0.0 323,057 - GFF2268 0.39 -0.7 323,057 - GFF2268 0.39 +0.1 323,057 - GFF2268 0.39 -0.0 323,161 + GFF2268 0.68 -1.4 323,161 + GFF2268 0.68 -0.5 323,162 - GFF2268 0.68 +0.2 323,177 - GFF2268 0.72 -0.3 323,262 + -1.0 323,262 + +0.4 323,262 + +0.1 323,262 + -0.4 323,262 + -0.8 323,263 - -0.1 323,266 + +0.8 323,266 + -0.9 323,266 + +0.1 323,267 - -0.9 323,267 - +0.8 323,267 - +0.1 323,489 + +0.4
Or see this region's nucleotide sequence