Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2227 and GFF2228 are separated by 18 nucleotides GFF2228 and GFF2229 are separated by 79 nucleotides
GFF2227 - Tricarboxylate transport protein TctC, at 288,581 to 289,588
GFF2227
GFF2228 - glycerophosphoryl diester phosphodiesterase, at 289,607 to 291,082
GFF2228
GFF2229 - Pca regulon regulatory protein PcaR, at 291,162 to 291,947
GFF2229
Position (kb) 289
290
291
292 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 289.076 kb on + strand, within GFF2227 at 289.077 kb on - strand, within GFF2227 at 289.077 kb on - strand, within GFF2227 at 289.163 kb on + strand, within GFF2227 at 289.164 kb on - strand, within GFF2227 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.914 kb on + strand, within GFF2228 at 289.915 kb on - strand, within GFF2228 at 289.915 kb on - strand, within GFF2228 at 289.915 kb on - strand, within GFF2228 at 289.915 kb on - strand, within GFF2228 at 289.915 kb on - strand, within GFF2228 at 289.915 kb on - strand, within GFF2228 at 289.944 kb on + strand, within GFF2228 at 290.064 kb on + strand, within GFF2228 at 290.064 kb on + strand, within GFF2228 at 290.065 kb on - strand, within GFF2228 at 290.065 kb on - strand, within GFF2228 at 290.103 kb on + strand, within GFF2228 at 290.103 kb on + strand, within GFF2228 at 290.104 kb on - strand, within GFF2228 at 290.334 kb on + strand, within GFF2228 at 290.334 kb on + strand, within GFF2228 at 290.334 kb on + strand, within GFF2228 at 290.335 kb on - strand, within GFF2228 at 290.335 kb on - strand, within GFF2228 at 290.490 kb on + strand, within GFF2228 at 290.491 kb on - strand, within GFF2228 at 290.500 kb on - strand, within GFF2228 at 290.643 kb on + strand, within GFF2228 at 290.644 kb on - strand, within GFF2228 at 290.685 kb on + strand, within GFF2228 at 291.508 kb on + strand, within GFF2229 at 291.577 kb on + strand, within GFF2229 at 291.578 kb on - strand, within GFF2229 at 291.688 kb on + strand, within GFF2229 at 291.689 kb on - strand, within GFF2229 at 291.689 kb on - strand, within GFF2229 at 291.689 kb on - strand, within GFF2229 at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.898 kb on + strand at 291.899 kb on - strand at 291.899 kb on - strand at 291.899 kb on - strand at 291.899 kb on - strand at 291.899 kb on - strand at 291.899 kb on - strand at 291.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 289,076 + GFF2227 0.49 -0.7 289,077 - GFF2227 0.49 -0.2 289,077 - GFF2227 0.49 -0.5 289,163 + GFF2227 0.58 +1.6 289,164 - GFF2227 0.58 +0.2 289,914 + GFF2228 0.21 -2.8 289,914 + GFF2228 0.21 -0.4 289,914 + GFF2228 0.21 -0.8 289,914 + GFF2228 0.21 -0.9 289,914 + GFF2228 0.21 -0.2 289,914 + GFF2228 0.21 -0.9 289,914 + GFF2228 0.21 -0.2 289,914 + GFF2228 0.21 +0.6 289,915 - GFF2228 0.21 -0.2 289,915 - GFF2228 0.21 -0.3 289,915 - GFF2228 0.21 -1.4 289,915 - GFF2228 0.21 -0.8 289,915 - GFF2228 0.21 -0.4 289,915 - GFF2228 0.21 -0.9 289,944 + GFF2228 0.23 -0.1 290,064 + GFF2228 0.31 -0.1 290,064 + GFF2228 0.31 +0.3 290,065 - GFF2228 0.31 -0.0 290,065 - GFF2228 0.31 -0.7 290,103 + GFF2228 0.34 -1.0 290,103 + GFF2228 0.34 -1.4 290,104 - GFF2228 0.34 -0.9 290,334 + GFF2228 0.49 -0.5 290,334 + GFF2228 0.49 +0.6 290,334 + GFF2228 0.49 -2.6 290,335 - GFF2228 0.49 -0.2 290,335 - GFF2228 0.49 +0.3 290,490 + GFF2228 0.60 -0.6 290,491 - GFF2228 0.60 -0.1 290,500 - GFF2228 0.61 +0.9 290,643 + GFF2228 0.70 -0.8 290,644 - GFF2228 0.70 +0.1 290,685 + GFF2228 0.73 -0.2 291,508 + GFF2229 0.44 -0.2 291,577 + GFF2229 0.53 -1.6 291,578 - GFF2229 0.53 +0.2 291,688 + GFF2229 0.67 +0.0 291,689 - GFF2229 0.67 -1.3 291,689 - GFF2229 0.67 -0.4 291,689 - GFF2229 0.67 -2.1 291,898 + -1.2 291,898 + +0.6 291,898 + -0.6 291,898 + -0.4 291,898 + -0.4 291,898 + +0.1 291,898 + +0.1 291,898 + -0.2 291,898 + +0.2 291,898 + +0.8 291,898 + +0.4 291,899 - +1.2 291,899 - +0.2 291,899 - -0.1 291,899 - -0.3 291,899 - -0.4 291,899 - +0.5 291,899 - -0.4
Or see this region's nucleotide sequence