Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2155 and GFF2156 are separated by 49 nucleotides GFF2156 and GFF2157 are separated by 0 nucleotides GFF2157 and GFF2158 are separated by 8 nucleotides
GFF2155 - Signal transduction histidine kinase CheA, at 203,153 to 209,362
GFF2155
GFF2156 - Deoxyribodipyrimidine photolyase (EC 4.1.99.3), at 209,412 to 210,911
GFF2156
GFF2157 - UPF0301 protein YqgE, at 210,912 to 211,511
GFF2157
GFF2158 - Putative pre-16S rRNA nuclease YqgF, at 211,520 to 211,969
GFF2158
Position (kb) 209
210
211 Strain fitness (log2 ratio) -2
-1
0
1
2 at 208.550 kb on + strand, within GFF2155 at 208.550 kb on + strand, within GFF2155 at 208.551 kb on - strand, within GFF2155 at 208.595 kb on + strand, within GFF2155 at 208.596 kb on - strand, within GFF2155 at 208.820 kb on + strand at 208.820 kb on + strand at 208.820 kb on + strand at 208.820 kb on + strand at 208.820 kb on + strand at 208.820 kb on + strand at 208.821 kb on - strand at 208.821 kb on - strand at 208.821 kb on - strand at 208.821 kb on - strand at 208.821 kb on - strand at 209.246 kb on + strand at 209.247 kb on - strand at 209.273 kb on + strand at 209.273 kb on + strand at 209.274 kb on - strand at 209.274 kb on - strand at 209.274 kb on - strand at 209.274 kb on - strand at 209.325 kb on - strand at 209.379 kb on + strand at 209.380 kb on - strand at 209.380 kb on - strand at 209.380 kb on - strand at 209.380 kb on - strand at 209.500 kb on + strand at 209.500 kb on + strand at 209.500 kb on + strand at 209.500 kb on + strand at 209.501 kb on - strand at 209.501 kb on - strand at 209.603 kb on - strand, within GFF2156 at 209.603 kb on - strand, within GFF2156 at 209.671 kb on + strand, within GFF2156 at 209.672 kb on - strand, within GFF2156 at 209.672 kb on - strand, within GFF2156 at 209.761 kb on + strand, within GFF2156 at 209.761 kb on + strand, within GFF2156 at 209.761 kb on + strand, within GFF2156 at 209.761 kb on + strand, within GFF2156 at 209.761 kb on + strand, within GFF2156 at 209.762 kb on - strand, within GFF2156 at 209.762 kb on - strand, within GFF2156 at 209.842 kb on + strand, within GFF2156 at 209.842 kb on + strand, within GFF2156 at 209.843 kb on - strand, within GFF2156 at 209.843 kb on - strand, within GFF2156 at 209.962 kb on + strand, within GFF2156 at 209.962 kb on + strand, within GFF2156 at 209.962 kb on + strand, within GFF2156 at 209.963 kb on - strand, within GFF2156 at 210.004 kb on + strand, within GFF2156 at 210.004 kb on + strand, within GFF2156 at 210.004 kb on + strand, within GFF2156 at 210.005 kb on - strand, within GFF2156 at 210.005 kb on - strand, within GFF2156 at 210.005 kb on - strand, within GFF2156 at 210.031 kb on + strand, within GFF2156 at 210.031 kb on + strand, within GFF2156 at 210.031 kb on + strand, within GFF2156 at 210.032 kb on - strand, within GFF2156 at 210.032 kb on - strand, within GFF2156 at 210.032 kb on - strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.203 kb on - strand, within GFF2156 at 210.264 kb on + strand, within GFF2156 at 210.264 kb on + strand, within GFF2156 at 210.264 kb on + strand, within GFF2156 at 210.264 kb on + strand, within GFF2156 at 210.265 kb on - strand, within GFF2156 at 210.427 kb on + strand, within GFF2156 at 210.427 kb on + strand, within GFF2156 at 210.427 kb on + strand, within GFF2156 at 210.427 kb on + strand, within GFF2156 at 210.427 kb on + strand, within GFF2156 at 210.427 kb on + strand, within GFF2156 at 210.428 kb on - strand, within GFF2156 at 210.428 kb on - strand, within GFF2156 at 210.445 kb on + strand, within GFF2156 at 210.445 kb on + strand, within GFF2156 at 210.445 kb on + strand, within GFF2156 at 210.445 kb on + strand, within GFF2156 at 210.445 kb on + strand, within GFF2156 at 210.446 kb on - strand, within GFF2156 at 210.446 kb on - strand, within GFF2156 at 210.446 kb on - strand, within GFF2156 at 210.502 kb on + strand, within GFF2156 at 210.502 kb on + strand, within GFF2156 at 210.502 kb on + strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.780 kb on + strand at 210.781 kb on - strand at 210.781 kb on - strand at 210.817 kb on + strand at 210.817 kb on + strand at 210.818 kb on - strand at 210.877 kb on + strand at 210.877 kb on + strand at 210.877 kb on + strand at 210.877 kb on + strand at 210.877 kb on + strand at 210.877 kb on + strand at 210.878 kb on - strand at 210.878 kb on - strand at 210.878 kb on - strand at 210.911 kb on + strand at 210.911 kb on + strand at 210.911 kb on + strand at 210.911 kb on + strand at 210.911 kb on + strand at 210.911 kb on + strand at 210.912 kb on - strand at 210.912 kb on - strand at 210.912 kb on - strand at 210.912 kb on - strand at 210.912 kb on - strand at 211.005 kb on + strand, within GFF2157 at 211.005 kb on + strand, within GFF2157 at 211.005 kb on + strand, within GFF2157 at 211.006 kb on - strand, within GFF2157 at 211.006 kb on - strand, within GFF2157 at 211.224 kb on + strand, within GFF2157 at 211.224 kb on + strand, within GFF2157 at 211.224 kb on + strand, within GFF2157 at 211.224 kb on + strand, within GFF2157 at 211.225 kb on - strand, within GFF2157 at 211.225 kb on - strand, within GFF2157 at 211.225 kb on - strand, within GFF2157 at 211.335 kb on + strand, within GFF2157 at 211.443 kb on + strand, within GFF2157 at 211.443 kb on + strand, within GFF2157 at 211.443 kb on + strand, within GFF2157 at 211.443 kb on + strand, within GFF2157
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 208,550 + GFF2155 0.87 +0.4 208,550 + GFF2155 0.87 +0.2 208,551 - GFF2155 0.87 +0.8 208,595 + GFF2155 0.88 +0.4 208,596 - GFF2155 0.88 +0.6 208,820 + +0.7 208,820 + +1.4 208,820 + +0.5 208,820 + +1.3 208,820 + +0.1 208,820 + +0.4 208,821 - +1.1 208,821 - -0.1 208,821 - +0.2 208,821 - +0.8 208,821 - +0.9 209,246 + -0.5 209,247 - -1.5 209,273 + +0.1 209,273 + -0.9 209,274 - -2.2 209,274 - -2.7 209,274 - -1.4 209,274 - -2.2 209,325 - -0.2 209,379 + -0.6 209,380 - +0.0 209,380 - -0.1 209,380 - +0.3 209,380 - -0.6 209,500 + -0.1 209,500 + -0.1 209,500 + -0.0 209,500 + -1.0 209,501 - -0.2 209,501 - +0.3 209,603 - GFF2156 0.13 -0.0 209,603 - GFF2156 0.13 +0.6 209,671 + GFF2156 0.17 -0.1 209,672 - GFF2156 0.17 +0.2 209,672 - GFF2156 0.17 -0.6 209,761 + GFF2156 0.23 +0.5 209,761 + GFF2156 0.23 -0.0 209,761 + GFF2156 0.23 -0.7 209,761 + GFF2156 0.23 -1.9 209,761 + GFF2156 0.23 +0.9 209,762 - GFF2156 0.23 +0.4 209,762 - GFF2156 0.23 -0.1 209,842 + GFF2156 0.29 +0.2 209,842 + GFF2156 0.29 -0.9 209,843 - GFF2156 0.29 +0.7 209,843 - GFF2156 0.29 +0.4 209,962 + GFF2156 0.37 +0.3 209,962 + GFF2156 0.37 +0.2 209,962 + GFF2156 0.37 +0.9 209,963 - GFF2156 0.37 +0.2 210,004 + GFF2156 0.39 -0.2 210,004 + GFF2156 0.39 -1.1 210,004 + GFF2156 0.39 +1.2 210,005 - GFF2156 0.40 +0.5 210,005 - GFF2156 0.40 -0.9 210,005 - GFF2156 0.40 +0.2 210,031 + GFF2156 0.41 -1.4 210,031 + GFF2156 0.41 +1.6 210,031 + GFF2156 0.41 +0.9 210,032 - GFF2156 0.41 -0.7 210,032 - GFF2156 0.41 +1.0 210,032 - GFF2156 0.41 -0.4 210,160 + GFF2156 0.50 +0.1 210,160 + GFF2156 0.50 +1.3 210,160 + GFF2156 0.50 -0.7 210,160 + GFF2156 0.50 -0.6 210,160 + GFF2156 0.50 -0.6 210,160 + GFF2156 0.50 +0.2 210,160 + GFF2156 0.50 -0.5 210,161 - GFF2156 0.50 +0.1 210,161 - GFF2156 0.50 +0.4 210,161 - GFF2156 0.50 -0.2 210,161 - GFF2156 0.50 -0.0 210,161 - GFF2156 0.50 -0.2 210,161 - GFF2156 0.50 -0.6 210,161 - GFF2156 0.50 -1.0 210,203 - GFF2156 0.53 -0.3 210,264 + GFF2156 0.57 +0.5 210,264 + GFF2156 0.57 -0.7 210,264 + GFF2156 0.57 -1.1 210,264 + GFF2156 0.57 +0.1 210,265 - GFF2156 0.57 +0.8 210,427 + GFF2156 0.68 +1.3 210,427 + GFF2156 0.68 +0.7 210,427 + GFF2156 0.68 -0.6 210,427 + GFF2156 0.68 -0.1 210,427 + GFF2156 0.68 -1.4 210,427 + GFF2156 0.68 -0.5 210,428 - GFF2156 0.68 -1.3 210,428 - GFF2156 0.68 +0.1 210,445 + GFF2156 0.69 +0.2 210,445 + GFF2156 0.69 -0.9 210,445 + GFF2156 0.69 -0.0 210,445 + GFF2156 0.69 -0.5 210,445 + GFF2156 0.69 -0.7 210,446 - GFF2156 0.69 +0.1 210,446 - GFF2156 0.69 +0.8 210,446 - GFF2156 0.69 -0.7 210,502 + GFF2156 0.73 -0.2 210,502 + GFF2156 0.73 +1.6 210,502 + GFF2156 0.73 +1.9 210,503 - GFF2156 0.73 +0.1 210,503 - GFF2156 0.73 +0.9 210,503 - GFF2156 0.73 -1.7 210,503 - GFF2156 0.73 -0.2 210,503 - GFF2156 0.73 +0.4 210,503 - GFF2156 0.73 +0.2 210,503 - GFF2156 0.73 -0.8 210,503 - GFF2156 0.73 +1.4 210,503 - GFF2156 0.73 -0.5 210,503 - GFF2156 0.73 -2.2 210,780 + -0.4 210,781 - +0.3 210,781 - -0.2 210,817 + +0.2 210,817 + -0.3 210,818 - -0.6 210,877 + -0.3 210,877 + +0.7 210,877 + -0.8 210,877 + +0.6 210,877 + -0.0 210,877 + -0.0 210,878 - -1.9 210,878 - +1.2 210,878 - +0.6 210,911 + +0.5 210,911 + -0.0 210,911 + -1.3 210,911 + -0.2 210,911 + -0.3 210,911 + -0.1 210,912 - -0.2 210,912 - -0.7 210,912 - -0.3 210,912 - -0.1 210,912 - +0.9 211,005 + GFF2157 0.15 -0.5 211,005 + GFF2157 0.15 -0.1 211,005 + GFF2157 0.15 -1.8 211,006 - GFF2157 0.16 -0.4 211,006 - GFF2157 0.16 -0.3 211,224 + GFF2157 0.52 -0.5 211,224 + GFF2157 0.52 -0.8 211,224 + GFF2157 0.52 -0.7 211,224 + GFF2157 0.52 -1.2 211,225 - GFF2157 0.52 -0.4 211,225 - GFF2157 0.52 -1.1 211,225 - GFF2157 0.52 -0.5 211,335 + GFF2157 0.70 -0.6 211,443 + GFF2157 0.89 -0.6 211,443 + GFF2157 0.89 -0.5 211,443 + GFF2157 0.89 +0.3 211,443 + GFF2157 0.89 -0.0
Or see this region's nucleotide sequence