Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2028 and GFF2029 are separated by 131 nucleotides GFF2029 and GFF2030 are separated by 114 nucleotides GFF2030 and GFF2031 are separated by 183 nucleotides
GFF2028 - Uncharacterized MFS-type transporter, at 70,379 to 72,073
GFF2028
GFF2029 - FIG00347684: hypothetical protein, at 72,205 to 72,354
GFF2029
GFF2030 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 72,469 to 73,581
GFF2030
GFF2031 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 73,765 to 74,877
GFF2031
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1 at 71.540 kb on + strand, within GFF2028 at 71.540 kb on + strand, within GFF2028 at 71.541 kb on - strand, within GFF2028 at 71.564 kb on + strand, within GFF2028 at 71.564 kb on + strand, within GFF2028 at 71.565 kb on - strand, within GFF2028 at 71.565 kb on - strand, within GFF2028 at 71.805 kb on + strand, within GFF2028 at 71.805 kb on + strand, within GFF2028 at 71.805 kb on + strand, within GFF2028 at 71.819 kb on + strand, within GFF2028 at 71.819 kb on + strand, within GFF2028 at 71.821 kb on - strand, within GFF2028 at 71.870 kb on + strand, within GFF2028 at 71.870 kb on + strand, within GFF2028 at 71.870 kb on + strand, within GFF2028 at 71.871 kb on - strand, within GFF2028 at 71.871 kb on - strand, within GFF2028 at 71.871 kb on - strand, within GFF2028 at 71.969 kb on + strand at 71.969 kb on + strand at 71.969 kb on + strand at 71.969 kb on + strand at 71.969 kb on + strand at 71.969 kb on + strand at 71.969 kb on + strand at 71.969 kb on + strand at 71.969 kb on + strand at 71.969 kb on + strand at 71.969 kb on + strand at 71.970 kb on - strand at 71.970 kb on - strand at 71.970 kb on - strand at 71.970 kb on - strand at 71.970 kb on - strand at 71.970 kb on - strand at 71.970 kb on - strand at 71.970 kb on - strand at 71.970 kb on - strand at 71.970 kb on - strand at 71.970 kb on - strand at 71.970 kb on - strand at 71.970 kb on - strand at 72.059 kb on + strand at 72.059 kb on + strand at 72.059 kb on + strand at 72.059 kb on + strand at 72.059 kb on + strand at 72.059 kb on + strand at 72.060 kb on - strand at 72.352 kb on + strand at 72.352 kb on + strand at 72.353 kb on - strand at 72.353 kb on - strand at 72.353 kb on - strand at 72.512 kb on + strand at 72.512 kb on + strand at 72.513 kb on - strand at 72.513 kb on - strand at 72.513 kb on - strand at 72.542 kb on + strand at 72.542 kb on + strand at 72.542 kb on + strand at 72.543 kb on - strand at 72.572 kb on + strand at 72.572 kb on + strand at 72.572 kb on + strand at 72.573 kb on - strand at 72.573 kb on - strand at 72.971 kb on + strand, within GFF2030 at 72.972 kb on - strand, within GFF2030 at 72.972 kb on - strand, within GFF2030 at 73.151 kb on + strand, within GFF2030 at 73.152 kb on - strand, within GFF2030 at 73.152 kb on - strand, within GFF2030 at 73.169 kb on + strand, within GFF2030 at 73.238 kb on + strand, within GFF2030 at 73.239 kb on - strand, within GFF2030 at 73.239 kb on - strand, within GFF2030 at 73.239 kb on - strand, within GFF2030 at 73.507 kb on + strand at 73.508 kb on - strand at 73.508 kb on - strand at 73.508 kb on - strand at 73.508 kb on - strand at 73.628 kb on + strand at 73.628 kb on + strand at 73.629 kb on - strand at 73.629 kb on - strand at 73.838 kb on + strand at 73.839 kb on - strand at 74.270 kb on + strand, within GFF2031 at 74.270 kb on + strand, within GFF2031 at 74.270 kb on + strand, within GFF2031 at 74.270 kb on + strand, within GFF2031 at 74.271 kb on - strand, within GFF2031 at 74.381 kb on + strand, within GFF2031 at 74.381 kb on + strand, within GFF2031 at 74.381 kb on + strand, within GFF2031 at 74.381 kb on + strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.450 kb on + strand, within GFF2031 at 74.537 kb on + strand, within GFF2031 at 74.537 kb on + strand, within GFF2031 at 74.538 kb on - strand, within GFF2031 at 74.538 kb on - strand, within GFF2031 at 74.538 kb on - strand, within GFF2031 at 74.538 kb on - strand, within GFF2031
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 71,540 + GFF2028 0.68 -0.0 71,540 + GFF2028 0.68 -1.4 71,541 - GFF2028 0.69 -0.6 71,564 + GFF2028 0.70 +0.6 71,564 + GFF2028 0.70 +0.6 71,565 - GFF2028 0.70 -0.1 71,565 - GFF2028 0.70 -0.2 71,805 + GFF2028 0.84 -0.5 71,805 + GFF2028 0.84 -1.2 71,805 + GFF2028 0.84 -0.9 71,819 + GFF2028 0.85 +1.1 71,819 + GFF2028 0.85 +0.4 71,821 - GFF2028 0.85 -0.2 71,870 + GFF2028 0.88 -1.7 71,870 + GFF2028 0.88 -0.1 71,870 + GFF2028 0.88 +0.6 71,871 - GFF2028 0.88 -0.3 71,871 - GFF2028 0.88 -0.4 71,871 - GFF2028 0.88 +0.5 71,969 + +0.4 71,969 + -0.2 71,969 + +0.1 71,969 + -0.1 71,969 + -0.5 71,969 + -0.2 71,969 + +0.0 71,969 + +1.1 71,969 + +0.0 71,969 + +0.1 71,969 + -0.1 71,970 - +1.3 71,970 - +0.3 71,970 - +0.2 71,970 - +0.5 71,970 - +0.4 71,970 - +0.3 71,970 - +0.4 71,970 - -2.4 71,970 - -0.9 71,970 - -0.4 71,970 - +0.9 71,970 - -1.1 71,970 - -0.1 72,059 + +0.1 72,059 + -0.6 72,059 + -0.2 72,059 + -0.1 72,059 + -0.1 72,059 + +0.1 72,060 - -0.3 72,352 + -0.8 72,352 + +0.6 72,353 - -1.0 72,353 - -1.5 72,353 - +0.8 72,512 + -0.2 72,512 + -0.3 72,513 - +0.6 72,513 - -0.0 72,513 - -1.2 72,542 + +0.5 72,542 + -1.4 72,542 + -0.8 72,543 - -0.2 72,572 + +0.4 72,572 + +0.8 72,572 + -1.0 72,573 - -0.7 72,573 - -0.2 72,971 + GFF2030 0.45 -0.4 72,972 - GFF2030 0.45 -0.1 72,972 - GFF2030 0.45 -0.1 73,151 + GFF2030 0.61 +0.1 73,152 - GFF2030 0.61 +0.4 73,152 - GFF2030 0.61 +0.9 73,169 + GFF2030 0.63 -0.4 73,238 + GFF2030 0.69 +1.2 73,239 - GFF2030 0.69 -1.8 73,239 - GFF2030 0.69 +0.2 73,239 - GFF2030 0.69 +0.6 73,507 + -1.1 73,508 - -1.8 73,508 - -0.5 73,508 - -0.7 73,508 - -1.2 73,628 + -0.4 73,628 + -0.3 73,629 - +0.6 73,629 - -0.6 73,838 + -1.2 73,839 - -1.3 74,270 + GFF2031 0.45 +0.2 74,270 + GFF2031 0.45 +0.1 74,270 + GFF2031 0.45 -0.3 74,270 + GFF2031 0.45 -0.6 74,271 - GFF2031 0.45 -1.5 74,381 + GFF2031 0.55 -0.7 74,381 + GFF2031 0.55 -0.8 74,381 + GFF2031 0.55 -0.9 74,381 + GFF2031 0.55 -0.7 74,382 - GFF2031 0.55 -0.9 74,382 - GFF2031 0.55 -0.8 74,382 - GFF2031 0.55 +0.0 74,382 - GFF2031 0.55 -0.3 74,382 - GFF2031 0.55 -1.4 74,382 - GFF2031 0.55 +0.6 74,382 - GFF2031 0.55 +0.1 74,382 - GFF2031 0.55 -0.7 74,450 + GFF2031 0.62 -0.3 74,537 + GFF2031 0.69 +0.3 74,537 + GFF2031 0.69 -0.1 74,538 - GFF2031 0.69 +0.1 74,538 - GFF2031 0.69 -0.0 74,538 - GFF2031 0.69 -0.2 74,538 - GFF2031 0.69 +0.6
Or see this region's nucleotide sequence