Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1954 and GFF1955 overlap by 4 nucleotides GFF1955 and GFF1956 are separated by 99 nucleotides GFF1956 and GFF1957 overlap by 11 nucleotides
GFF1954 - no description, at 647,168 to 648,433
GFF1954
GFF1955 - hypothetical protein, at 648,430 to 649,458
GFF1955
GFF1956 - Ser/Thr protein phosphatase family protein, at 649,558 to 650,421
GFF1956
GFF1957 - no description, at 650,411 to 650,758
GFF1957
Position (kb) 648
649
650 Strain fitness (log2 ratio) -1
0
1 at 647.488 kb on - strand, within GFF1954 at 647.865 kb on + strand, within GFF1954 at 647.890 kb on - strand, within GFF1954 at 647.890 kb on - strand, within GFF1954 at 647.955 kb on - strand, within GFF1954 at 648.511 kb on + strand at 648.511 kb on + strand at 648.511 kb on + strand at 648.511 kb on + strand at 648.512 kb on - strand at 648.512 kb on - strand at 648.512 kb on - strand at 648.512 kb on - strand at 648.533 kb on + strand, within GFF1955 at 648.562 kb on + strand, within GFF1955 at 648.562 kb on + strand, within GFF1955 at 648.562 kb on + strand, within GFF1955 at 648.562 kb on + strand, within GFF1955 at 648.562 kb on + strand, within GFF1955 at 648.562 kb on + strand, within GFF1955 at 648.602 kb on - strand, within GFF1955 at 648.693 kb on + strand, within GFF1955 at 648.694 kb on - strand, within GFF1955 at 648.724 kb on + strand, within GFF1955 at 648.724 kb on + strand, within GFF1955 at 648.724 kb on + strand, within GFF1955 at 648.724 kb on + strand, within GFF1955 at 648.724 kb on + strand, within GFF1955 at 648.725 kb on - strand, within GFF1955 at 648.725 kb on - strand, within GFF1955 at 648.725 kb on - strand, within GFF1955 at 648.725 kb on - strand, within GFF1955 at 648.726 kb on + strand, within GFF1955 at 648.726 kb on + strand, within GFF1955 at 648.726 kb on + strand, within GFF1955 at 648.727 kb on - strand, within GFF1955 at 648.727 kb on - strand, within GFF1955 at 648.727 kb on - strand, within GFF1955 at 648.727 kb on - strand, within GFF1955 at 648.895 kb on + strand, within GFF1955 at 648.895 kb on + strand, within GFF1955 at 648.896 kb on - strand, within GFF1955 at 648.896 kb on - strand, within GFF1955 at 648.896 kb on - strand, within GFF1955 at 648.896 kb on - strand, within GFF1955 at 648.899 kb on + strand, within GFF1955 at 648.899 kb on + strand, within GFF1955 at 648.900 kb on - strand, within GFF1955 at 648.900 kb on - strand, within GFF1955 at 648.900 kb on - strand, within GFF1955 at 649.009 kb on - strand, within GFF1955 at 649.107 kb on - strand, within GFF1955 at 649.274 kb on + strand, within GFF1955 at 649.309 kb on + strand, within GFF1955 at 649.365 kb on + strand at 649.365 kb on + strand at 649.365 kb on + strand at 649.375 kb on - strand at 649.552 kb on - strand at 649.552 kb on - strand at 649.742 kb on - strand, within GFF1956 at 649.742 kb on - strand, within GFF1956 at 650.210 kb on - strand, within GFF1956 at 650.290 kb on + strand, within GFF1956 at 650.313 kb on + strand, within GFF1956 at 650.313 kb on + strand, within GFF1956 at 650.313 kb on + strand, within GFF1956 at 650.411 kb on - strand at 650.411 kb on - strand at 650.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 647,488 - GFF1954 0.25 -0.5 647,865 + GFF1954 0.55 -0.9 647,890 - GFF1954 0.57 +0.4 647,890 - GFF1954 0.57 -1.0 647,955 - GFF1954 0.62 -0.9 648,511 + -0.5 648,511 + -0.3 648,511 + +0.6 648,511 + -0.4 648,512 - -0.0 648,512 - +0.6 648,512 - -1.0 648,512 - -0.4 648,533 + GFF1955 0.10 -0.3 648,562 + GFF1955 0.13 -1.0 648,562 + GFF1955 0.13 -0.6 648,562 + GFF1955 0.13 -1.2 648,562 + GFF1955 0.13 +1.6 648,562 + GFF1955 0.13 -0.4 648,562 + GFF1955 0.13 -0.5 648,602 - GFF1955 0.17 +0.1 648,693 + GFF1955 0.26 +0.1 648,694 - GFF1955 0.26 -1.6 648,724 + GFF1955 0.29 -0.1 648,724 + GFF1955 0.29 +0.6 648,724 + GFF1955 0.29 -0.1 648,724 + GFF1955 0.29 -0.3 648,724 + GFF1955 0.29 +0.8 648,725 - GFF1955 0.29 +0.3 648,725 - GFF1955 0.29 +0.6 648,725 - GFF1955 0.29 -0.0 648,725 - GFF1955 0.29 -0.4 648,726 + GFF1955 0.29 +0.3 648,726 + GFF1955 0.29 -0.1 648,726 + GFF1955 0.29 -0.3 648,727 - GFF1955 0.29 +0.2 648,727 - GFF1955 0.29 -0.2 648,727 - GFF1955 0.29 +0.6 648,727 - GFF1955 0.29 -0.0 648,895 + GFF1955 0.45 +0.6 648,895 + GFF1955 0.45 -0.2 648,896 - GFF1955 0.45 +0.1 648,896 - GFF1955 0.45 -0.2 648,896 - GFF1955 0.45 +1.3 648,896 - GFF1955 0.45 +0.1 648,899 + GFF1955 0.46 +0.3 648,899 + GFF1955 0.46 -0.1 648,900 - GFF1955 0.46 -0.6 648,900 - GFF1955 0.46 -0.2 648,900 - GFF1955 0.46 +0.0 649,009 - GFF1955 0.56 +0.3 649,107 - GFF1955 0.66 +1.4 649,274 + GFF1955 0.82 -0.0 649,309 + GFF1955 0.85 +0.1 649,365 + -0.3 649,365 + +0.2 649,365 + -0.1 649,375 - -0.4 649,552 - -0.4 649,552 - +1.1 649,742 - GFF1956 0.21 -0.7 649,742 - GFF1956 0.21 +0.5 650,210 - GFF1956 0.75 -0.5 650,290 + GFF1956 0.85 -0.9 650,313 + GFF1956 0.87 -0.5 650,313 + GFF1956 0.87 -0.3 650,313 + GFF1956 0.87 -0.0 650,411 - -1.5 650,411 - -0.7 650,411 - +0.1
Or see this region's nucleotide sequence