Strain Fitness in Variovorax sp. SCN45 around GFF1906

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1904 and GFF1905 are separated by 55 nucleotidesGFF1905 and GFF1906 are separated by 21 nucleotidesGFF1906 and GFF1907 are separated by 332 nucleotides GFF1904 - Uncharacterized MFS-type transporter, at 584,718 to 586,010 GFF1904 GFF1905 - hypothetical protein, at 586,066 to 586,815 GFF1905 GFF1906 - no description, at 586,837 to 587,694 GFF1906 GFF1907 - Transcriptional regulator, AraC family, at 588,027 to 588,974 GFF1907 Position (kb) 586 587 588Strain fitness (log2 ratio) -2 -1 0 1at 586.325 kb on + strand, within GFF1905at 586.325 kb on + strand, within GFF1905at 586.326 kb on - strand, within GFF1905at 586.382 kb on - strand, within GFF1905at 586.382 kb on - strand, within GFF1905at 586.382 kb on - strand, within GFF1905at 586.571 kb on + strand, within GFF1905at 586.571 kb on + strand, within GFF1905at 586.572 kb on - strand, within GFF1905at 586.724 kb on + strand, within GFF1905at 586.725 kb on - strand, within GFF1905at 586.861 kb on + strandat 586.861 kb on + strandat 586.862 kb on - strandat 586.862 kb on - strandat 586.862 kb on - strandat 587.042 kb on + strand, within GFF1906at 587.043 kb on - strand, within GFF1906at 587.117 kb on + strand, within GFF1906at 587.118 kb on - strand, within GFF1906at 587.118 kb on - strand, within GFF1906at 587.183 kb on + strand, within GFF1906at 587.183 kb on + strand, within GFF1906at 587.184 kb on - strand, within GFF1906at 587.184 kb on - strand, within GFF1906at 587.195 kb on + strand, within GFF1906at 587.216 kb on + strand, within GFF1906at 587.216 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.309 kb on + strand, within GFF1906at 587.310 kb on - strand, within GFF1906at 587.310 kb on - strand, within GFF1906at 587.315 kb on + strand, within GFF1906at 587.315 kb on + strand, within GFF1906at 587.315 kb on + strand, within GFF1906at 587.316 kb on - strand, within GFF1906at 587.316 kb on - strand, within GFF1906at 587.316 kb on - strand, within GFF1906at 587.447 kb on + strand, within GFF1906at 587.504 kb on + strand, within GFF1906at 587.504 kb on + strand, within GFF1906at 587.505 kb on - strand, within GFF1906at 587.505 kb on - strand, within GFF1906at 587.505 kb on - strand, within GFF1906at 587.505 kb on - strand, within GFF1906at 587.505 kb on - strand, within GFF1906at 587.546 kb on + strand, within GFF1906at 587.547 kb on - strand, within GFF1906at 587.780 kb on - strandat 587.780 kb on - strandat 587.794 kb on - strandat 587.794 kb on - strandat 587.794 kb on - strandat 587.979 kb on + strandat 587.979 kb on + strandat 587.979 kb on + strandat 588.003 kb on + strandat 588.004 kb on - strandat 588.004 kb on - strandat 588.129 kb on + strand, within GFF1907at 588.129 kb on + strand, within GFF1907at 588.129 kb on + strand, within GFF1907at 588.130 kb on - strand, within GFF1907at 588.204 kb on + strand, within GFF1907at 588.205 kb on - strand, within GFF1907at 588.205 kb on - strand, within GFF1907at 588.504 kb on + strand, within GFF1907at 588.579 kb on + strand, within GFF1907at 588.580 kb on - strand, within GFF1907at 588.580 kb on - strand, within GFF1907at 588.580 kb on - strand, within GFF1907at 588.666 kb on + strand, within GFF1907at 588.667 kb on - strand, within GFF1907at 588.667 kb on - strand, within GFF1907at 588.667 kb on - strand, within GFF1907

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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586,325 + GFF1905 0.35 -0.8
586,325 + GFF1905 0.35 +0.2
586,326 - GFF1905 0.35 +1.0
586,382 - GFF1905 0.42 -0.2
586,382 - GFF1905 0.42 -0.3
586,382 - GFF1905 0.42 -0.1
586,571 + GFF1905 0.67 +0.0
586,571 + GFF1905 0.67 +0.5
586,572 - GFF1905 0.67 +0.6
586,724 + GFF1905 0.88 +0.1
586,725 - GFF1905 0.88 -0.0
586,861 + -0.1
586,861 + +0.9
586,862 - +0.3
586,862 - +0.3
586,862 - -0.4
587,042 + GFF1906 0.24 +0.1
587,043 - GFF1906 0.24 +0.1
587,117 + GFF1906 0.33 -2.0
587,118 - GFF1906 0.33 +1.2
587,118 - GFF1906 0.33 -0.0
587,183 + GFF1906 0.40 -0.3
587,183 + GFF1906 0.40 -0.6
587,184 - GFF1906 0.40 +0.8
587,184 - GFF1906 0.40 -0.6
587,195 + GFF1906 0.42 -0.3
587,216 + GFF1906 0.44 +0.7
587,216 + GFF1906 0.44 +0.5
587,309 + GFF1906 0.55 -0.5
587,309 + GFF1906 0.55 -0.5
587,309 + GFF1906 0.55 +1.4
587,309 + GFF1906 0.55 +0.8
587,309 + GFF1906 0.55 +0.4
587,309 + GFF1906 0.55 +0.6
587,309 + GFF1906 0.55 -0.3
587,309 + GFF1906 0.55 +0.1
587,309 + GFF1906 0.55 +0.8
587,310 - GFF1906 0.55 +0.2
587,310 - GFF1906 0.55 +0.2
587,315 + GFF1906 0.56 -0.4
587,315 + GFF1906 0.56 -0.5
587,315 + GFF1906 0.56 -0.5
587,316 - GFF1906 0.56 +0.3
587,316 - GFF1906 0.56 +0.0
587,316 - GFF1906 0.56 -1.3
587,447 + GFF1906 0.71 -0.8
587,504 + GFF1906 0.78 -0.0
587,504 + GFF1906 0.78 +0.3
587,505 - GFF1906 0.78 -0.5
587,505 - GFF1906 0.78 -0.8
587,505 - GFF1906 0.78 -0.4
587,505 - GFF1906 0.78 -0.8
587,505 - GFF1906 0.78 +0.1
587,546 + GFF1906 0.83 +0.1
587,547 - GFF1906 0.83 -1.3
587,780 - +0.5
587,780 - -0.0
587,794 - +0.6
587,794 - +0.0
587,794 - -0.1
587,979 + +0.4
587,979 + -0.9
587,979 + -1.2
588,003 + -0.5
588,004 - +0.9
588,004 - +0.1
588,129 + GFF1907 0.11 -0.3
588,129 + GFF1907 0.11 +0.6
588,129 + GFF1907 0.11 +1.0
588,130 - GFF1907 0.11 -1.4
588,204 + GFF1907 0.19 -0.5
588,205 - GFF1907 0.19 -0.7
588,205 - GFF1907 0.19 -2.4
588,504 + GFF1907 0.50 +0.2
588,579 + GFF1907 0.58 +1.6
588,580 - GFF1907 0.58 -1.4
588,580 - GFF1907 0.58 +0.2
588,580 - GFF1907 0.58 -0.6
588,666 + GFF1907 0.67 -0.4
588,667 - GFF1907 0.68 -0.8
588,667 - GFF1907 0.68 +0.1
588,667 - GFF1907 0.68 -0.6

Or see this region's nucleotide sequence