Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1797 and GFF1798 are separated by 63 nucleotides GFF1798 and GFF1799 are separated by 23 nucleotides GFF1799 and GFF1800 are separated by 13 nucleotides
GFF1797 - FIG022199: FAD-binding protein, at 459,404 to 460,741
GFF1797
GFF1798 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 460,805 to 461,713
GFF1798
GFF1799 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 461,737 to 462,522
GFF1799
GFF1800 - Glyoxylate carboligase (EC 4.1.1.47), at 462,536 to 464,329
GFF1800
Position (kb) 461
462
463 Strain fitness (log2 ratio) -2
-1
0
1 at 460.878 kb on + strand at 461.801 kb on + strand at 461.802 kb on - strand at 461.862 kb on - strand, within GFF1799 at 461.984 kb on + strand, within GFF1799 at 461.984 kb on + strand, within GFF1799 at 461.985 kb on - strand, within GFF1799 at 461.985 kb on - strand, within GFF1799 at 461.985 kb on - strand, within GFF1799 at 461.985 kb on - strand, within GFF1799 at 461.985 kb on - strand, within GFF1799 at 461.985 kb on - strand, within GFF1799 at 461.993 kb on + strand, within GFF1799 at 461.993 kb on + strand, within GFF1799 at 462.411 kb on - strand, within GFF1799 at 462.411 kb on - strand, within GFF1799 at 462.422 kb on + strand, within GFF1799 at 462.422 kb on + strand, within GFF1799 at 462.423 kb on - strand, within GFF1799 at 462.538 kb on - strand at 462.798 kb on + strand, within GFF1800 at 462.799 kb on - strand, within GFF1800 at 462.862 kb on - strand, within GFF1800 at 462.906 kb on + strand, within GFF1800 at 462.906 kb on + strand, within GFF1800 at 462.907 kb on - strand, within GFF1800 at 462.990 kb on + strand, within GFF1800 at 462.990 kb on + strand, within GFF1800 at 463.110 kb on + strand, within GFF1800 at 463.110 kb on + strand, within GFF1800 at 463.110 kb on + strand, within GFF1800 at 463.111 kb on - strand, within GFF1800 at 463.111 kb on - strand, within GFF1800 at 463.164 kb on + strand, within GFF1800 at 463.164 kb on + strand, within GFF1800 at 463.164 kb on + strand, within GFF1800 at 463.165 kb on - strand, within GFF1800 at 463.165 kb on - strand, within GFF1800 at 463.165 kb on - strand, within GFF1800 at 463.165 kb on - strand, within GFF1800 at 463.203 kb on + strand, within GFF1800 at 463.455 kb on + strand, within GFF1800 at 463.456 kb on - strand, within GFF1800 at 463.456 kb on - strand, within GFF1800
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 460,878 + -0.5 461,801 + -0.0 461,802 - -0.4 461,862 - GFF1799 0.16 -0.1 461,984 + GFF1799 0.31 +0.0 461,984 + GFF1799 0.31 +0.6 461,985 - GFF1799 0.32 +0.6 461,985 - GFF1799 0.32 +0.1 461,985 - GFF1799 0.32 +0.2 461,985 - GFF1799 0.32 +0.2 461,985 - GFF1799 0.32 -0.2 461,985 - GFF1799 0.32 -0.5 461,993 + GFF1799 0.33 -1.2 461,993 + GFF1799 0.33 -0.1 462,411 - GFF1799 0.86 +0.1 462,411 - GFF1799 0.86 -0.2 462,422 + GFF1799 0.87 -1.2 462,422 + GFF1799 0.87 +0.4 462,423 - GFF1799 0.87 -1.2 462,538 - +0.3 462,798 + GFF1800 0.15 -0.7 462,799 - GFF1800 0.15 -0.2 462,862 - GFF1800 0.18 +0.3 462,906 + GFF1800 0.21 -1.8 462,906 + GFF1800 0.21 -1.7 462,907 - GFF1800 0.21 -0.1 462,990 + GFF1800 0.25 -0.6 462,990 + GFF1800 0.25 -0.5 463,110 + GFF1800 0.32 -0.9 463,110 + GFF1800 0.32 -0.5 463,110 + GFF1800 0.32 -1.1 463,111 - GFF1800 0.32 -0.1 463,111 - GFF1800 0.32 -0.6 463,164 + GFF1800 0.35 -0.3 463,164 + GFF1800 0.35 -0.3 463,164 + GFF1800 0.35 -1.2 463,165 - GFF1800 0.35 +0.1 463,165 - GFF1800 0.35 -1.4 463,165 - GFF1800 0.35 -0.5 463,165 - GFF1800 0.35 -0.7 463,203 + GFF1800 0.37 +0.6 463,455 + GFF1800 0.51 -0.5 463,456 - GFF1800 0.51 +1.3 463,456 - GFF1800 0.51 -0.5
Or see this region's nucleotide sequence