Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1754 and GFF1755 overlap by 13 nucleotides GFF1755 and GFF1756 are separated by 253 nucleotides GFF1756 and GFF1757 are separated by 11 nucleotides
GFF1754 - Nicel/Cobalt-specific TonB-dependent outer membrane receptor, at 415,097 to 417,193
GFF1754
GFF1755 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 417,181 to 418,719
GFF1755
GFF1756 - hypothetical protein, at 418,973 to 419,272
GFF1756
GFF1757 - hypothetical protein, at 419,284 to 419,673
GFF1757
Position (kb) 417
418
419 Strain fitness (log2 ratio) -2
-1
0
1
2 at 416.204 kb on + strand, within GFF1754 at 416.204 kb on + strand, within GFF1754 at 416.204 kb on + strand, within GFF1754 at 416.205 kb on - strand, within GFF1754 at 416.276 kb on + strand, within GFF1754 at 416.276 kb on + strand, within GFF1754 at 416.318 kb on + strand, within GFF1754 at 416.318 kb on + strand, within GFF1754 at 416.318 kb on + strand, within GFF1754 at 416.319 kb on - strand, within GFF1754 at 416.319 kb on - strand, within GFF1754 at 416.319 kb on - strand, within GFF1754 at 416.319 kb on - strand, within GFF1754 at 416.319 kb on - strand, within GFF1754 at 416.348 kb on + strand, within GFF1754 at 416.348 kb on + strand, within GFF1754 at 416.375 kb on + strand, within GFF1754 at 416.375 kb on + strand, within GFF1754 at 416.375 kb on + strand, within GFF1754 at 416.375 kb on + strand, within GFF1754 at 416.375 kb on + strand, within GFF1754 at 416.376 kb on - strand, within GFF1754 at 416.376 kb on - strand, within GFF1754 at 416.376 kb on - strand, within GFF1754 at 416.376 kb on - strand, within GFF1754 at 416.376 kb on - strand, within GFF1754 at 416.376 kb on - strand, within GFF1754 at 416.466 kb on - strand, within GFF1754 at 416.466 kb on - strand, within GFF1754 at 416.466 kb on - strand, within GFF1754 at 416.466 kb on - strand, within GFF1754 at 416.466 kb on - strand, within GFF1754 at 416.466 kb on - strand, within GFF1754 at 416.481 kb on + strand, within GFF1754 at 416.482 kb on - strand, within GFF1754 at 416.482 kb on - strand, within GFF1754 at 416.669 kb on + strand, within GFF1754 at 416.669 kb on + strand, within GFF1754 at 416.669 kb on + strand, within GFF1754 at 416.669 kb on + strand, within GFF1754 at 416.669 kb on + strand, within GFF1754 at 416.670 kb on - strand, within GFF1754 at 416.670 kb on - strand, within GFF1754 at 416.831 kb on + strand, within GFF1754 at 416.831 kb on + strand, within GFF1754 at 416.831 kb on + strand, within GFF1754 at 416.831 kb on + strand, within GFF1754 at 416.831 kb on + strand, within GFF1754 at 416.831 kb on + strand, within GFF1754 at 416.832 kb on - strand, within GFF1754 at 416.832 kb on - strand, within GFF1754 at 416.832 kb on - strand, within GFF1754 at 416.876 kb on + strand, within GFF1754 at 416.876 kb on + strand, within GFF1754 at 416.877 kb on - strand, within GFF1754 at 416.877 kb on - strand, within GFF1754 at 416.915 kb on + strand, within GFF1754 at 416.915 kb on + strand, within GFF1754 at 416.915 kb on + strand, within GFF1754 at 416.915 kb on + strand, within GFF1754 at 416.915 kb on + strand, within GFF1754 at 416.915 kb on + strand, within GFF1754 at 416.916 kb on - strand, within GFF1754 at 416.916 kb on - strand, within GFF1754 at 416.916 kb on - strand, within GFF1754 at 416.916 kb on - strand, within GFF1754 at 416.916 kb on - strand, within GFF1754 at 416.916 kb on - strand, within GFF1754 at 417.068 kb on + strand at 417.069 kb on - strand at 417.069 kb on - strand at 417.069 kb on - strand at 417.069 kb on - strand at 417.069 kb on - strand at 417.071 kb on + strand at 417.071 kb on + strand at 417.071 kb on + strand at 417.071 kb on + strand at 417.071 kb on + strand at 417.071 kb on + strand at 417.071 kb on + strand at 417.071 kb on + strand at 417.071 kb on + strand at 417.072 kb on - strand at 417.072 kb on - strand at 417.074 kb on + strand at 417.074 kb on + strand at 417.074 kb on + strand at 417.074 kb on + strand at 417.075 kb on - strand at 417.183 kb on - strand at 417.183 kb on - strand at 417.183 kb on - strand at 417.206 kb on + strand at 417.206 kb on + strand at 417.206 kb on + strand at 417.206 kb on + strand at 417.206 kb on + strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.207 kb on - strand at 417.236 kb on + strand at 417.236 kb on + strand at 417.236 kb on + strand at 417.237 kb on - strand at 417.237 kb on - strand at 417.237 kb on - strand at 417.237 kb on - strand at 417.237 kb on - strand at 417.575 kb on + strand, within GFF1755 at 417.575 kb on + strand, within GFF1755 at 417.575 kb on + strand, within GFF1755 at 417.575 kb on + strand, within GFF1755 at 417.576 kb on - strand, within GFF1755 at 417.576 kb on - strand, within GFF1755 at 417.576 kb on - strand, within GFF1755 at 417.576 kb on - strand, within GFF1755 at 417.576 kb on - strand, within GFF1755 at 417.576 kb on - strand, within GFF1755 at 418.580 kb on + strand at 418.580 kb on + strand at 418.580 kb on + strand at 418.581 kb on - strand at 418.581 kb on - strand at 418.581 kb on - strand at 418.581 kb on - strand at 418.581 kb on - strand at 418.581 kb on - strand at 418.581 kb on - strand at 418.581 kb on - strand at 418.604 kb on + strand at 418.604 kb on + strand at 418.604 kb on + strand at 418.604 kb on + strand at 418.605 kb on - strand at 418.605 kb on - strand at 418.605 kb on - strand at 418.605 kb on - strand at 418.679 kb on + strand at 418.679 kb on + strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.805 kb on + strand at 418.805 kb on + strand at 418.806 kb on - strand at 418.806 kb on - strand at 418.806 kb on - strand at 418.821 kb on + strand at 418.822 kb on - strand at 418.822 kb on - strand at 418.822 kb on - strand at 418.822 kb on - strand at 418.933 kb on + strand at 418.933 kb on + strand at 418.933 kb on + strand at 418.933 kb on + strand at 418.934 kb on - strand at 418.952 kb on + strand at 418.953 kb on - strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.978 kb on + strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 418.979 kb on - strand at 419.091 kb on - strand, within GFF1756 at 419.091 kb on - strand, within GFF1756 at 419.091 kb on - strand, within GFF1756 at 419.127 kb on - strand, within GFF1756 at 419.271 kb on - strand at 419.557 kb on + strand, within GFF1757 at 419.558 kb on - strand, within GFF1757 at 419.558 kb on - strand, within GFF1757 at 419.572 kb on + strand, within GFF1757 at 419.572 kb on + strand, within GFF1757 at 419.573 kb on - strand, within GFF1757 at 419.573 kb on - strand, within GFF1757 at 419.573 kb on - strand, within GFF1757 at 419.573 kb on - strand, within GFF1757 at 419.584 kb on + strand, within GFF1757 at 419.584 kb on + strand, within GFF1757 at 419.584 kb on + strand, within GFF1757 at 419.584 kb on + strand, within GFF1757 at 419.585 kb on - strand, within GFF1757 at 419.585 kb on - strand, within GFF1757 at 419.585 kb on - strand, within GFF1757 at 419.585 kb on - strand, within GFF1757 at 419.585 kb on - strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.608 kb on + strand, within GFF1757 at 419.609 kb on - strand, within GFF1757 at 419.609 kb on - strand, within GFF1757 at 419.609 kb on - strand, within GFF1757 at 419.609 kb on - strand, within GFF1757 at 419.609 kb on - strand, within GFF1757 at 419.609 kb on - strand, within GFF1757 at 419.712 kb on - strand at 419.712 kb on - strand at 419.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 416,204 + GFF1754 0.53 -0.9 416,204 + GFF1754 0.53 -0.6 416,204 + GFF1754 0.53 -0.2 416,205 - GFF1754 0.53 -0.7 416,276 + GFF1754 0.56 +0.2 416,276 + GFF1754 0.56 +1.6 416,318 + GFF1754 0.58 -0.5 416,318 + GFF1754 0.58 +0.6 416,318 + GFF1754 0.58 +0.4 416,319 - GFF1754 0.58 +0.5 416,319 - GFF1754 0.58 -0.3 416,319 - GFF1754 0.58 +2.0 416,319 - GFF1754 0.58 +1.0 416,319 - GFF1754 0.58 +1.1 416,348 + GFF1754 0.60 +0.8 416,348 + GFF1754 0.60 +0.5 416,375 + GFF1754 0.61 +0.1 416,375 + GFF1754 0.61 +0.4 416,375 + GFF1754 0.61 +0.5 416,375 + GFF1754 0.61 -1.7 416,375 + GFF1754 0.61 -0.7 416,376 - GFF1754 0.61 -0.8 416,376 - GFF1754 0.61 -0.5 416,376 - GFF1754 0.61 -0.4 416,376 - GFF1754 0.61 -0.2 416,376 - GFF1754 0.61 -0.3 416,376 - GFF1754 0.61 +0.4 416,466 - GFF1754 0.65 +0.3 416,466 - GFF1754 0.65 -0.1 416,466 - GFF1754 0.65 -0.7 416,466 - GFF1754 0.65 -0.8 416,466 - GFF1754 0.65 -1.4 416,466 - GFF1754 0.65 -1.0 416,481 + GFF1754 0.66 -0.6 416,482 - GFF1754 0.66 -0.1 416,482 - GFF1754 0.66 -0.3 416,669 + GFF1754 0.75 -0.0 416,669 + GFF1754 0.75 +0.5 416,669 + GFF1754 0.75 -0.7 416,669 + GFF1754 0.75 -0.3 416,669 + GFF1754 0.75 -0.2 416,670 - GFF1754 0.75 -0.7 416,670 - GFF1754 0.75 +0.6 416,831 + GFF1754 0.83 +0.0 416,831 + GFF1754 0.83 +0.1 416,831 + GFF1754 0.83 -0.4 416,831 + GFF1754 0.83 +1.6 416,831 + GFF1754 0.83 -0.6 416,831 + GFF1754 0.83 -0.4 416,832 - GFF1754 0.83 +1.0 416,832 - GFF1754 0.83 +1.2 416,832 - GFF1754 0.83 -0.6 416,876 + GFF1754 0.85 -1.7 416,876 + GFF1754 0.85 +0.6 416,877 - GFF1754 0.85 -0.3 416,877 - GFF1754 0.85 +0.1 416,915 + GFF1754 0.87 +0.1 416,915 + GFF1754 0.87 +0.2 416,915 + GFF1754 0.87 -0.4 416,915 + GFF1754 0.87 +0.1 416,915 + GFF1754 0.87 -1.6 416,915 + GFF1754 0.87 -0.5 416,916 - GFF1754 0.87 -0.3 416,916 - GFF1754 0.87 +0.6 416,916 - GFF1754 0.87 -0.9 416,916 - GFF1754 0.87 +0.6 416,916 - GFF1754 0.87 -0.7 416,916 - GFF1754 0.87 -0.4 417,068 + +0.8 417,069 - -2.4 417,069 - -0.7 417,069 - -1.2 417,069 - -0.1 417,069 - -0.1 417,071 + +0.2 417,071 + -0.5 417,071 + -0.2 417,071 + -0.1 417,071 + -0.8 417,071 + -0.4 417,071 + +0.2 417,071 + +0.2 417,071 + +0.2 417,072 - +1.2 417,072 - +0.2 417,074 + +0.1 417,074 + +0.2 417,074 + -0.0 417,074 + +0.1 417,075 - -0.5 417,183 - -0.1 417,183 - +0.2 417,183 - -0.2 417,206 + -0.2 417,206 + +0.0 417,206 + -0.2 417,206 + -0.5 417,206 + +1.1 417,207 - +1.1 417,207 - +0.0 417,207 - -0.1 417,207 - -0.5 417,207 - +0.1 417,207 - -0.5 417,207 - -0.6 417,207 - -0.0 417,207 - -0.4 417,207 - -0.4 417,207 - +0.4 417,207 - +0.5 417,207 - +0.0 417,207 - -0.4 417,207 - -0.4 417,236 + -0.8 417,236 + -0.2 417,236 + +0.6 417,237 - +0.0 417,237 - -2.1 417,237 - +0.6 417,237 - -1.1 417,237 - -0.7 417,575 + GFF1755 0.26 -0.8 417,575 + GFF1755 0.26 -0.4 417,575 + GFF1755 0.26 +0.1 417,575 + GFF1755 0.26 -0.4 417,576 - GFF1755 0.26 -2.7 417,576 - GFF1755 0.26 -1.2 417,576 - GFF1755 0.26 +1.3 417,576 - GFF1755 0.26 -0.5 417,576 - GFF1755 0.26 -1.4 417,576 - GFF1755 0.26 -0.2 418,580 + -1.0 418,580 + -0.0 418,580 + -0.3 418,581 - -1.0 418,581 - -0.4 418,581 - +0.4 418,581 - -0.8 418,581 - -0.7 418,581 - +0.8 418,581 - -0.4 418,581 - -0.7 418,604 + +0.2 418,604 + -0.3 418,604 + -1.7 418,604 + +0.2 418,605 - +0.4 418,605 - +0.1 418,605 - +0.1 418,605 - -0.4 418,679 + -0.1 418,679 + +2.2 418,680 - -0.4 418,680 - +0.2 418,680 - +0.6 418,805 + +0.1 418,805 + -0.4 418,806 - -0.8 418,806 - +0.2 418,806 - -1.1 418,821 + -0.2 418,822 - -0.2 418,822 - -0.2 418,822 - -0.8 418,822 - -0.3 418,933 + -0.2 418,933 + +0.1 418,933 + +0.6 418,933 + -0.2 418,934 - -0.6 418,952 + -0.2 418,953 - -0.5 418,978 + -0.9 418,978 + -0.2 418,978 + -0.4 418,978 + +0.1 418,978 + +0.4 418,978 + -1.4 418,978 + -0.1 418,978 + -0.5 418,979 - -0.3 418,979 - +0.0 418,979 - -0.0 418,979 - +0.6 418,979 - -0.7 418,979 - +0.3 418,979 - -0.5 418,979 - -1.8 418,979 - -1.4 418,979 - -1.4 419,091 - GFF1756 0.39 +0.4 419,091 - GFF1756 0.39 -0.1 419,091 - GFF1756 0.39 -1.8 419,127 - GFF1756 0.51 -1.4 419,271 - -0.4 419,557 + GFF1757 0.70 -0.3 419,558 - GFF1757 0.70 +0.0 419,558 - GFF1757 0.70 -0.2 419,572 + GFF1757 0.74 -0.2 419,572 + GFF1757 0.74 -0.1 419,573 - GFF1757 0.74 +0.3 419,573 - GFF1757 0.74 -2.3 419,573 - GFF1757 0.74 +0.8 419,573 - GFF1757 0.74 -0.2 419,584 + GFF1757 0.77 -0.5 419,584 + GFF1757 0.77 -0.1 419,584 + GFF1757 0.77 -1.0 419,584 + GFF1757 0.77 +2.6 419,585 - GFF1757 0.77 +0.1 419,585 - GFF1757 0.77 +0.2 419,585 - GFF1757 0.77 -0.4 419,585 - GFF1757 0.77 +0.6 419,585 - GFF1757 0.77 +0.4 419,608 + GFF1757 0.83 +0.8 419,608 + GFF1757 0.83 +0.4 419,608 + GFF1757 0.83 -0.8 419,608 + GFF1757 0.83 -0.3 419,608 + GFF1757 0.83 -0.4 419,608 + GFF1757 0.83 +0.1 419,608 + GFF1757 0.83 -0.1 419,608 + GFF1757 0.83 +0.1 419,608 + GFF1757 0.83 -1.4 419,609 - GFF1757 0.83 -0.2 419,609 - GFF1757 0.83 -0.1 419,609 - GFF1757 0.83 -1.4 419,609 - GFF1757 0.83 +0.9 419,609 - GFF1757 0.83 -0.6 419,609 - GFF1757 0.83 -0.4 419,712 - +0.5 419,712 - -1.0 419,712 - -1.0
Or see this region's nucleotide sequence