Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1675 and GFF1676 overlap by 4 nucleotides GFF1676 and GFF1677 are separated by 36 nucleotides GFF1677 and GFF1678 are separated by 17 nucleotides GFF1678 and GFF1679 are separated by 123 nucleotides
GFF1675 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 320,317 to 321,297
GFF1675
GFF1676 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 321,294 to 322,166
GFF1676
GFF1677 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 322,203 to 323,405
GFF1677
GFF1678 - Transcriptional regulator, GntR family, at 323,423 to 324,214
GFF1678
GFF1679 - Riboflavin synthase eubacterial/eukaryotic (EC 2.5.1.9), at 324,338 to 325,042
GFF1679
Position (kb) 322
323
324 Strain fitness (log2 ratio) -2
-1
0
1 at 321.523 kb on + strand, within GFF1676 at 321.523 kb on + strand, within GFF1676 at 321.524 kb on - strand, within GFF1676 at 321.526 kb on + strand, within GFF1676 at 321.526 kb on + strand, within GFF1676 at 321.592 kb on + strand, within GFF1676 at 321.928 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.974 kb on - strand, within GFF1676 at 322.007 kb on - strand, within GFF1676 at 322.072 kb on + strand, within GFF1676 at 322.072 kb on + strand, within GFF1676 at 322.073 kb on - strand, within GFF1676 at 322.096 kb on - strand at 322.105 kb on + strand at 322.105 kb on + strand at 322.161 kb on + strand at 322.161 kb on + strand at 322.161 kb on + strand at 322.161 kb on + strand at 322.162 kb on - strand at 322.339 kb on + strand, within GFF1677 at 322.450 kb on + strand, within GFF1677 at 322.450 kb on + strand, within GFF1677 at 322.450 kb on + strand, within GFF1677 at 322.451 kb on - strand, within GFF1677 at 322.597 kb on + strand, within GFF1677 at 322.597 kb on + strand, within GFF1677 at 322.691 kb on - strand, within GFF1677 at 322.691 kb on - strand, within GFF1677 at 322.693 kb on + strand, within GFF1677 at 322.694 kb on - strand, within GFF1677 at 322.694 kb on - strand, within GFF1677 at 322.952 kb on - strand, within GFF1677 at 323.038 kb on + strand, within GFF1677 at 323.502 kb on + strand at 323.502 kb on + strand at 323.503 kb on - strand, within GFF1678 at 323.565 kb on + strand, within GFF1678 at 323.565 kb on + strand, within GFF1678 at 323.763 kb on + strand, within GFF1678 at 323.763 kb on + strand, within GFF1678 at 323.764 kb on - strand, within GFF1678 at 323.764 kb on - strand, within GFF1678 at 324.177 kb on + strand at 324.178 kb on - strand at 324.190 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 321,523 + GFF1676 0.26 -0.2 321,523 + GFF1676 0.26 -0.2 321,524 - GFF1676 0.26 -0.8 321,526 + GFF1676 0.27 +0.1 321,526 + GFF1676 0.27 -0.7 321,592 + GFF1676 0.34 -0.2 321,928 + GFF1676 0.73 +0.7 321,973 + GFF1676 0.78 -0.3 321,973 + GFF1676 0.78 -1.7 321,973 + GFF1676 0.78 +0.9 321,973 + GFF1676 0.78 -0.7 321,973 + GFF1676 0.78 -0.2 321,974 - GFF1676 0.78 -1.1 322,007 - GFF1676 0.82 -0.2 322,072 + GFF1676 0.89 +0.1 322,072 + GFF1676 0.89 -0.1 322,073 - GFF1676 0.89 +0.2 322,096 - -1.6 322,105 + -0.6 322,105 + -0.5 322,161 + -0.2 322,161 + +0.1 322,161 + -1.1 322,161 + +0.4 322,162 - -0.4 322,339 + GFF1677 0.11 -0.1 322,450 + GFF1677 0.21 -0.0 322,450 + GFF1677 0.21 -0.1 322,450 + GFF1677 0.21 +0.0 322,451 - GFF1677 0.21 -0.2 322,597 + GFF1677 0.33 -0.8 322,597 + GFF1677 0.33 -0.3 322,691 - GFF1677 0.41 -0.1 322,691 - GFF1677 0.41 -0.2 322,693 + GFF1677 0.41 +1.3 322,694 - GFF1677 0.41 -0.9 322,694 - GFF1677 0.41 +0.7 322,952 - GFF1677 0.62 -0.5 323,038 + GFF1677 0.69 +0.2 323,502 + -0.8 323,502 + +0.3 323,503 - GFF1678 0.10 -1.8 323,565 + GFF1678 0.18 -0.1 323,565 + GFF1678 0.18 -0.6 323,763 + GFF1678 0.43 +0.7 323,763 + GFF1678 0.43 -0.7 323,764 - GFF1678 0.43 -0.3 323,764 - GFF1678 0.43 -0.6 324,177 + +0.5 324,178 - -0.4 324,190 - -0.5
Or see this region's nucleotide sequence