Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1673 and GFF1674 overlap by 4 nucleotides GFF1674 and GFF1675 overlap by 8 nucleotides GFF1675 and GFF1676 overlap by 4 nucleotides GFF1676 and GFF1677 are separated by 36 nucleotides
GFF1673 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 318,856 to 319,566
GFF1673
GFF1674 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 319,563 to 320,324
GFF1674
GFF1675 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 320,317 to 321,297
GFF1675
GFF1676 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 321,294 to 322,166
GFF1676
GFF1677 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 322,203 to 323,405
GFF1677
Position (kb) 320
321
322 Strain fitness (log2 ratio) -1
0
1 at 319.621 kb on + strand at 320.423 kb on + strand, within GFF1675 at 320.423 kb on + strand, within GFF1675 at 320.423 kb on + strand, within GFF1675 at 320.423 kb on + strand, within GFF1675 at 320.423 kb on + strand, within GFF1675 at 320.597 kb on - strand, within GFF1675 at 320.601 kb on - strand, within GFF1675 at 320.601 kb on - strand, within GFF1675 at 320.618 kb on + strand, within GFF1675 at 320.618 kb on + strand, within GFF1675 at 320.618 kb on + strand, within GFF1675 at 320.619 kb on - strand, within GFF1675 at 320.619 kb on - strand, within GFF1675 at 321.089 kb on + strand, within GFF1675 at 321.090 kb on - strand, within GFF1675 at 321.090 kb on - strand, within GFF1675 at 321.090 kb on - strand, within GFF1675 at 321.182 kb on + strand, within GFF1675 at 321.183 kb on - strand, within GFF1675 at 321.183 kb on - strand, within GFF1675 at 321.523 kb on + strand, within GFF1676 at 321.523 kb on + strand, within GFF1676 at 321.524 kb on - strand, within GFF1676 at 321.526 kb on + strand, within GFF1676 at 321.526 kb on + strand, within GFF1676 at 321.592 kb on + strand, within GFF1676 at 321.928 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.973 kb on + strand, within GFF1676 at 321.974 kb on - strand, within GFF1676 at 322.007 kb on - strand, within GFF1676 at 322.072 kb on + strand, within GFF1676 at 322.072 kb on + strand, within GFF1676 at 322.073 kb on - strand, within GFF1676 at 322.096 kb on - strand at 322.105 kb on + strand at 322.105 kb on + strand at 322.161 kb on + strand at 322.161 kb on + strand at 322.161 kb on + strand at 322.161 kb on + strand at 322.162 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 319,621 + +0.7 320,423 + GFF1675 0.11 +0.3 320,423 + GFF1675 0.11 -1.3 320,423 + GFF1675 0.11 +0.7 320,423 + GFF1675 0.11 -0.4 320,423 + GFF1675 0.11 +0.0 320,597 - GFF1675 0.29 -1.0 320,601 - GFF1675 0.29 +1.3 320,601 - GFF1675 0.29 -0.2 320,618 + GFF1675 0.31 -0.2 320,618 + GFF1675 0.31 -0.1 320,618 + GFF1675 0.31 +1.4 320,619 - GFF1675 0.31 -0.8 320,619 - GFF1675 0.31 -0.1 321,089 + GFF1675 0.79 +0.4 321,090 - GFF1675 0.79 -0.9 321,090 - GFF1675 0.79 -0.2 321,090 - GFF1675 0.79 +0.8 321,182 + GFF1675 0.88 -0.2 321,183 - GFF1675 0.88 -0.3 321,183 - GFF1675 0.88 +0.7 321,523 + GFF1676 0.26 -0.2 321,523 + GFF1676 0.26 -0.2 321,524 - GFF1676 0.26 -0.8 321,526 + GFF1676 0.27 +0.1 321,526 + GFF1676 0.27 -0.7 321,592 + GFF1676 0.34 -0.2 321,928 + GFF1676 0.73 +0.7 321,973 + GFF1676 0.78 -0.3 321,973 + GFF1676 0.78 -1.7 321,973 + GFF1676 0.78 +0.9 321,973 + GFF1676 0.78 -0.7 321,973 + GFF1676 0.78 -0.2 321,974 - GFF1676 0.78 -1.1 322,007 - GFF1676 0.82 -0.2 322,072 + GFF1676 0.89 +0.1 322,072 + GFF1676 0.89 -0.1 322,073 - GFF1676 0.89 +0.2 322,096 - -1.6 322,105 + -0.6 322,105 + -0.5 322,161 + -0.2 322,161 + +0.1 322,161 + -1.1 322,161 + +0.4 322,162 - -0.4
Or see this region's nucleotide sequence