Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1669 and GFF1670 overlap by 11 nucleotides GFF1670 and GFF1671 overlap by 4 nucleotides GFF1671 and GFF1672 overlap by 4 nucleotides GFF1672 and GFF1673 are separated by 30 nucleotides
GFF1669 - hypothetical protein, at 314,732 to 316,075
GFF1669
GFF1670 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 316,065 to 316,592
GFF1670
GFF1671 - 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33), at 316,589 to 317,863
GFF1671
GFF1672 - BUG/TctC family periplasmic protein, at 317,860 to 318,825
GFF1672
GFF1673 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 318,856 to 319,566
GFF1673
Position (kb) 316
317
318 Strain fitness (log2 ratio) -1
0
1 at 316.316 kb on - strand, within GFF1670 at 316.316 kb on - strand, within GFF1670 at 316.665 kb on + strand at 316.666 kb on - strand at 316.965 kb on + strand, within GFF1671 at 316.992 kb on + strand, within GFF1671 at 317.451 kb on + strand, within GFF1671 at 317.451 kb on + strand, within GFF1671 at 317.452 kb on - strand, within GFF1671 at 317.452 kb on - strand, within GFF1671 at 317.452 kb on - strand, within GFF1671 at 317.565 kb on + strand, within GFF1671 at 317.566 kb on - strand, within GFF1671 at 317.649 kb on + strand, within GFF1671 at 317.650 kb on - strand, within GFF1671 at 317.650 kb on - strand, within GFF1671 at 317.650 kb on - strand, within GFF1671 at 317.879 kb on + strand at 318.279 kb on - strand, within GFF1672 at 318.279 kb on - strand, within GFF1672 at 318.279 kb on - strand, within GFF1672 at 318.315 kb on - strand, within GFF1672
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 316,316 - GFF1670 0.48 -0.1 316,316 - GFF1670 0.48 +0.1 316,665 + +0.5 316,666 - +0.2 316,965 + GFF1671 0.29 +1.7 316,992 + GFF1671 0.32 +0.3 317,451 + GFF1671 0.68 -0.6 317,451 + GFF1671 0.68 -0.9 317,452 - GFF1671 0.68 +0.1 317,452 - GFF1671 0.68 -0.0 317,452 - GFF1671 0.68 -0.3 317,565 + GFF1671 0.77 -0.7 317,566 - GFF1671 0.77 +0.1 317,649 + GFF1671 0.83 -1.1 317,650 - GFF1671 0.83 -0.8 317,650 - GFF1671 0.83 +1.7 317,650 - GFF1671 0.83 +0.8 317,879 + +0.2 318,279 - GFF1672 0.43 +0.5 318,279 - GFF1672 0.43 -0.3 318,279 - GFF1672 0.43 +0.8 318,315 - GFF1672 0.47 -0.5
Or see this region's nucleotide sequence