Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1601 and GFF1602 are separated by 23 nucleotides GFF1602 and GFF1603 overlap by 4 nucleotides GFF1603 and GFF1604 are separated by 1 nucleotides
GFF1601 - no description, at 199,020 to 200,219
GFF1601
GFF1602 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 200,243 to 200,965
GFF1602
GFF1603 - Branched-chain amino acid ABC transporter, ATP-binding protein LivG (TC 3.A.1.4.1), at 200,962 to 201,729
GFF1603
GFF1604 - Prolidase (EC 3.4.13.9), at 201,731 to 202,996
GFF1604
Position (kb) 200
201 Strain fitness (log2 ratio) -1
0
1 at 199.303 kb on + strand, within GFF1601 at 199.303 kb on + strand, within GFF1601 at 199.318 kb on + strand, within GFF1601 at 199.318 kb on + strand, within GFF1601 at 199.319 kb on - strand, within GFF1601 at 199.319 kb on - strand, within GFF1601 at 199.363 kb on + strand, within GFF1601 at 199.363 kb on + strand, within GFF1601 at 199.364 kb on - strand, within GFF1601 at 199.364 kb on - strand, within GFF1601 at 199.403 kb on - strand, within GFF1601 at 199.487 kb on - strand, within GFF1601 at 199.499 kb on - strand, within GFF1601 at 199.512 kb on + strand, within GFF1601 at 199.534 kb on + strand, within GFF1601 at 199.535 kb on - strand, within GFF1601 at 199.615 kb on + strand, within GFF1601 at 199.675 kb on + strand, within GFF1601 at 199.675 kb on + strand, within GFF1601 at 199.676 kb on - strand, within GFF1601 at 199.795 kb on + strand, within GFF1601 at 199.796 kb on - strand, within GFF1601 at 199.903 kb on + strand, within GFF1601 at 199.904 kb on - strand, within GFF1601 at 199.904 kb on - strand, within GFF1601 at 199.904 kb on - strand, within GFF1601 at 200.213 kb on + strand at 200.652 kb on + strand, within GFF1602 at 200.652 kb on + strand, within GFF1602 at 200.985 kb on - strand at 200.985 kb on - strand at 201.042 kb on - strand, within GFF1603 at 201.758 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 199,303 + GFF1601 0.24 +0.2 199,303 + GFF1601 0.24 +0.1 199,318 + GFF1601 0.25 -0.3 199,318 + GFF1601 0.25 -0.1 199,319 - GFF1601 0.25 -0.6 199,319 - GFF1601 0.25 -0.4 199,363 + GFF1601 0.29 -1.0 199,363 + GFF1601 0.29 +0.2 199,364 - GFF1601 0.29 -0.7 199,364 - GFF1601 0.29 -0.9 199,403 - GFF1601 0.32 -0.2 199,487 - GFF1601 0.39 +1.1 199,499 - GFF1601 0.40 -0.3 199,512 + GFF1601 0.41 +0.4 199,534 + GFF1601 0.43 -0.9 199,535 - GFF1601 0.43 +0.6 199,615 + GFF1601 0.50 -0.3 199,675 + GFF1601 0.55 +0.7 199,675 + GFF1601 0.55 +0.2 199,676 - GFF1601 0.55 -0.1 199,795 + GFF1601 0.65 -0.0 199,796 - GFF1601 0.65 -0.2 199,903 + GFF1601 0.74 +1.3 199,904 - GFF1601 0.74 +0.1 199,904 - GFF1601 0.74 +0.5 199,904 - GFF1601 0.74 -0.2 200,213 + -0.1 200,652 + GFF1602 0.57 -1.1 200,652 + GFF1602 0.57 +0.3 200,985 - +0.3 200,985 - +1.2 201,042 - GFF1603 0.10 +0.3 201,758 + -0.9
Or see this region's nucleotide sequence