Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1571 and GFF1572 are separated by 140 nucleotides GFF1572 and GFF1573 are separated by 101 nucleotides
GFF1571 - Transcriptional regulator, LysR family, at 171,535 to 172,404
GFF1571
GFF1572 - Transcriptional regulator, LysR family, at 172,545 to 173,438
GFF1572
GFF1573 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 173,540 to 174,274
GFF1573
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1 at 171.662 kb on + strand, within GFF1571 at 171.662 kb on + strand, within GFF1571 at 171.662 kb on + strand, within GFF1571 at 171.662 kb on + strand, within GFF1571 at 171.663 kb on - strand, within GFF1571 at 171.663 kb on - strand, within GFF1571 at 171.663 kb on - strand, within GFF1571 at 171.663 kb on - strand, within GFF1571 at 171.706 kb on - strand, within GFF1571 at 171.741 kb on + strand, within GFF1571 at 171.741 kb on + strand, within GFF1571 at 171.742 kb on - strand, within GFF1571 at 172.106 kb on - strand, within GFF1571 at 172.113 kb on + strand, within GFF1571 at 172.144 kb on + strand, within GFF1571 at 172.144 kb on + strand, within GFF1571 at 172.144 kb on + strand, within GFF1571 at 172.144 kb on + strand, within GFF1571 at 172.145 kb on - strand, within GFF1571 at 172.201 kb on + strand, within GFF1571 at 172.201 kb on + strand, within GFF1571 at 172.201 kb on + strand, within GFF1571 at 172.202 kb on - strand, within GFF1571 at 172.202 kb on - strand, within GFF1571 at 172.622 kb on - strand at 172.690 kb on + strand, within GFF1572 at 172.690 kb on + strand, within GFF1572 at 172.691 kb on - strand, within GFF1572 at 172.899 kb on + strand, within GFF1572 at 172.899 kb on + strand, within GFF1572 at 172.900 kb on - strand, within GFF1572 at 172.900 kb on - strand, within GFF1572 at 172.924 kb on + strand, within GFF1572 at 172.925 kb on - strand, within GFF1572 at 173.231 kb on + strand, within GFF1572 at 174.018 kb on - strand, within GFF1573 at 174.018 kb on - strand, within GFF1573
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 171,662 + GFF1571 0.15 -0.3 171,662 + GFF1571 0.15 -0.0 171,662 + GFF1571 0.15 +0.0 171,662 + GFF1571 0.15 -1.3 171,663 - GFF1571 0.15 -0.5 171,663 - GFF1571 0.15 -0.3 171,663 - GFF1571 0.15 -0.3 171,663 - GFF1571 0.15 -1.9 171,706 - GFF1571 0.20 -0.5 171,741 + GFF1571 0.24 -1.2 171,741 + GFF1571 0.24 -0.4 171,742 - GFF1571 0.24 -0.9 172,106 - GFF1571 0.66 -1.3 172,113 + GFF1571 0.66 -1.0 172,144 + GFF1571 0.70 +0.6 172,144 + GFF1571 0.70 -0.8 172,144 + GFF1571 0.70 -1.1 172,144 + GFF1571 0.70 -0.5 172,145 - GFF1571 0.70 -1.2 172,201 + GFF1571 0.77 -0.4 172,201 + GFF1571 0.77 -0.8 172,201 + GFF1571 0.77 +0.1 172,202 - GFF1571 0.77 -0.5 172,202 - GFF1571 0.77 +0.3 172,622 - -1.4 172,690 + GFF1572 0.16 -0.6 172,690 + GFF1572 0.16 -0.2 172,691 - GFF1572 0.16 +0.0 172,899 + GFF1572 0.40 -0.8 172,899 + GFF1572 0.40 -0.5 172,900 - GFF1572 0.40 -0.3 172,900 - GFF1572 0.40 -2.2 172,924 + GFF1572 0.42 -0.8 172,925 - GFF1572 0.43 +1.3 173,231 + GFF1572 0.77 -0.1 174,018 - GFF1573 0.65 -0.2 174,018 - GFF1573 0.65 +0.1
Or see this region's nucleotide sequence