Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1542 and GFF1543 are separated by 3 nucleotides GFF1543 and GFF1544 are separated by 2 nucleotides
GFF1542 - Anti-sigma B factor RsbT / Phosphoserine phosphatase RsbX (EC 3.1.3.3), at 139,176 to 140,171
GFF1542
GFF1543 - Putative SigmaB asociated two-component system sensor protein, at 140,175 to 141,053
GFF1543
GFF1544 - Two-component system sensor histidine kinase/response regulator hybrid, at 141,056 to 143,044
GFF1544
Position (kb) 140
141
142 Strain fitness (log2 ratio) -1
0
1
2 at 139.835 kb on - strand, within GFF1542 at 139.876 kb on - strand, within GFF1542 at 139.876 kb on - strand, within GFF1542 at 140.120 kb on + strand at 140.120 kb on + strand at 140.120 kb on + strand at 140.121 kb on - strand at 140.121 kb on - strand at 140.121 kb on - strand at 140.121 kb on - strand at 140.121 kb on - strand at 140.121 kb on - strand at 140.121 kb on - strand at 140.121 kb on - strand at 140.121 kb on - strand at 140.296 kb on - strand, within GFF1543 at 140.364 kb on + strand, within GFF1543 at 140.364 kb on + strand, within GFF1543 at 140.365 kb on - strand, within GFF1543 at 140.558 kb on + strand, within GFF1543 at 140.559 kb on - strand, within GFF1543 at 140.682 kb on + strand, within GFF1543 at 140.683 kb on - strand, within GFF1543 at 140.828 kb on + strand, within GFF1543 at 140.829 kb on - strand, within GFF1543 at 141.140 kb on + strand at 141.141 kb on - strand at 141.398 kb on + strand, within GFF1544 at 141.398 kb on + strand, within GFF1544 at 141.399 kb on - strand, within GFF1544 at 141.399 kb on - strand, within GFF1544 at 141.512 kb on + strand, within GFF1544 at 141.512 kb on + strand, within GFF1544 at 141.512 kb on + strand, within GFF1544 at 141.513 kb on - strand, within GFF1544 at 141.513 kb on - strand, within GFF1544
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 139,835 - GFF1542 0.66 -0.2 139,876 - GFF1542 0.70 +0.7 139,876 - GFF1542 0.70 -1.2 140,120 + +0.5 140,120 + +0.1 140,120 + +0.0 140,121 - -0.2 140,121 - +0.2 140,121 - -0.5 140,121 - -1.0 140,121 - +1.0 140,121 - -0.4 140,121 - -0.4 140,121 - -0.6 140,121 - +0.1 140,296 - GFF1543 0.14 +0.0 140,364 + GFF1543 0.22 +0.2 140,364 + GFF1543 0.22 -0.4 140,365 - GFF1543 0.22 +0.6 140,558 + GFF1543 0.44 +2.3 140,559 - GFF1543 0.44 +0.4 140,682 + GFF1543 0.58 -0.1 140,683 - GFF1543 0.58 -0.6 140,828 + GFF1543 0.74 -0.3 140,829 - GFF1543 0.74 +0.1 141,140 + +0.0 141,141 - -0.1 141,398 + GFF1544 0.17 +1.0 141,398 + GFF1544 0.17 +0.2 141,399 - GFF1544 0.17 +0.3 141,399 - GFF1544 0.17 -0.4 141,512 + GFF1544 0.23 -0.0 141,512 + GFF1544 0.23 -0.2 141,512 + GFF1544 0.23 +0.1 141,513 - GFF1544 0.23 +0.6 141,513 - GFF1544 0.23 -0.4
Or see this region's nucleotide sequence