Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1495 and GFF1496 overlap by 4 nucleotides GFF1496 and GFF1497 are separated by 38 nucleotides GFF1497 and GFF1498 overlap by 4 nucleotides GFF1498 and GFF1499 are separated by 6 nucleotides
GFF1495 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 88,196 to 89,122
GFF1495
GFF1496 - Demethylmenaquinone methyltransferase-like protein, at 89,119 to 89,808
GFF1496
GFF1497 - BUG/TctC family periplasmic protein, at 89,847 to 90,833
GFF1497
GFF1498 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 90,830 to 91,750
GFF1498
GFF1499 - BUG/TctC family periplasmic protein, at 91,757 to 92,743
GFF1499
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1
2 at 89.046 kb on + strand at 89.046 kb on + strand at 89.047 kb on - strand at 89.047 kb on - strand at 89.047 kb on - strand at 89.047 kb on - strand at 89.051 kb on + strand at 89.051 kb on + strand at 89.051 kb on + strand at 89.051 kb on + strand at 89.051 kb on + strand at 89.051 kb on + strand at 89.051 kb on + strand at 89.051 kb on + strand at 89.051 kb on + strand at 89.051 kb on + strand at 89.051 kb on + strand at 89.052 kb on - strand at 89.052 kb on - strand at 89.052 kb on - strand at 89.052 kb on - strand at 89.052 kb on - strand at 89.052 kb on - strand at 89.052 kb on - strand at 89.052 kb on - strand at 89.052 kb on - strand at 89.052 kb on - strand at 89.052 kb on - strand at 90.055 kb on + strand, within GFF1497 at 90.115 kb on - strand, within GFF1497 at 90.268 kb on + strand, within GFF1497 at 90.269 kb on - strand, within GFF1497 at 90.493 kb on + strand, within GFF1497 at 90.493 kb on + strand, within GFF1497 at 90.494 kb on - strand, within GFF1497 at 90.494 kb on - strand, within GFF1497 at 90.560 kb on - strand, within GFF1497 at 90.870 kb on + strand at 90.870 kb on + strand at 90.871 kb on - strand at 91.104 kb on + strand, within GFF1498 at 91.104 kb on + strand, within GFF1498 at 91.104 kb on + strand, within GFF1498 at 91.104 kb on + strand, within GFF1498 at 91.105 kb on - strand, within GFF1498 at 91.105 kb on - strand, within GFF1498 at 91.105 kb on - strand, within GFF1498 at 91.214 kb on + strand, within GFF1498 at 91.509 kb on + strand, within GFF1498 at 91.509 kb on + strand, within GFF1498
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 89,046 + -0.5 89,046 + -0.5 89,047 - +0.4 89,047 - -0.4 89,047 - +0.0 89,047 - -0.2 89,051 + -1.2 89,051 + +0.6 89,051 + +0.5 89,051 + -0.1 89,051 + -1.4 89,051 + -0.8 89,051 + -0.4 89,051 + +0.1 89,051 + +0.2 89,051 + -0.1 89,051 + -0.4 89,052 - +0.1 89,052 - +0.5 89,052 - +0.3 89,052 - +0.1 89,052 - +0.1 89,052 - -0.3 89,052 - -0.5 89,052 - -0.5 89,052 - -0.1 89,052 - +0.6 89,052 - -0.8 90,055 + GFF1497 0.21 -1.9 90,115 - GFF1497 0.27 +0.1 90,268 + GFF1497 0.43 -0.3 90,269 - GFF1497 0.43 -0.5 90,493 + GFF1497 0.65 -0.4 90,493 + GFF1497 0.65 -1.0 90,494 - GFF1497 0.66 -0.8 90,494 - GFF1497 0.66 +0.3 90,560 - GFF1497 0.72 -0.9 90,870 + -0.7 90,870 + -0.4 90,871 - +0.1 91,104 + GFF1498 0.30 +1.6 91,104 + GFF1498 0.30 +0.1 91,104 + GFF1498 0.30 +0.7 91,104 + GFF1498 0.30 -0.7 91,105 - GFF1498 0.30 -0.4 91,105 - GFF1498 0.30 +0.4 91,105 - GFF1498 0.30 +2.6 91,214 + GFF1498 0.42 -0.4 91,509 + GFF1498 0.74 +2.6 91,509 + GFF1498 0.74 +0.7
Or see this region's nucleotide sequence