Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1454 and GFF1455 are separated by 561 nucleotides GFF1455 and GFF1456 are separated by 209 nucleotides
GFF1454 - Transcriptional regulator, LacI/PurR family, at 47,019 to 48,029
GFF1454
GFF1455 - DNA polymerase II (EC 2.7.7.7), at 48,591 to 48,953
GFF1455
GFF1456 - probable integrase/recombinase protein, at 49,163 to 50,200
GFF1456
Position (kb) 48
49 Strain fitness (log2 ratio) -2
-1
0
1
2 at 47.598 kb on + strand, within GFF1454 at 47.598 kb on + strand, within GFF1454 at 47.598 kb on + strand, within GFF1454 at 47.598 kb on + strand, within GFF1454 at 47.598 kb on + strand, within GFF1454 at 47.598 kb on + strand, within GFF1454 at 47.599 kb on - strand, within GFF1454 at 47.599 kb on - strand, within GFF1454 at 47.710 kb on - strand, within GFF1454 at 47.710 kb on - strand, within GFF1454 at 47.710 kb on - strand, within GFF1454 at 47.760 kb on + strand, within GFF1454 at 47.760 kb on + strand, within GFF1454 at 47.760 kb on + strand, within GFF1454 at 47.760 kb on + strand, within GFF1454 at 47.760 kb on + strand, within GFF1454 at 47.760 kb on + strand, within GFF1454 at 47.761 kb on - strand, within GFF1454 at 47.761 kb on - strand, within GFF1454 at 47.761 kb on - strand, within GFF1454 at 47.761 kb on - strand, within GFF1454 at 47.761 kb on - strand, within GFF1454 at 47.761 kb on - strand, within GFF1454 at 47.761 kb on - strand, within GFF1454 at 47.859 kb on - strand, within GFF1454 at 48.038 kb on + strand at 48.038 kb on + strand at 48.039 kb on - strand at 48.039 kb on - strand at 48.092 kb on + strand at 48.093 kb on - strand at 48.093 kb on - strand at 48.093 kb on - strand at 48.093 kb on - strand at 48.093 kb on - strand at 48.192 kb on + strand at 48.192 kb on + strand at 48.193 kb on - strand at 48.193 kb on - strand at 48.264 kb on + strand at 48.268 kb on + strand at 48.311 kb on + strand at 48.311 kb on + strand at 48.312 kb on - strand at 48.338 kb on + strand at 48.346 kb on + strand at 48.347 kb on - strand at 48.347 kb on - strand at 48.392 kb on + strand at 48.392 kb on + strand at 48.392 kb on + strand at 48.392 kb on + strand at 48.393 kb on - strand at 48.393 kb on - strand at 48.393 kb on - strand at 48.404 kb on + strand at 48.405 kb on - strand at 48.405 kb on - strand at 48.405 kb on - strand at 48.405 kb on - strand at 48.412 kb on - strand at 48.412 kb on - strand at 48.412 kb on - strand at 48.412 kb on - strand at 48.485 kb on + strand at 48.485 kb on + strand at 48.486 kb on - strand at 48.486 kb on - strand at 48.518 kb on + strand at 48.518 kb on + strand at 48.519 kb on - strand at 48.519 kb on - strand at 48.519 kb on - strand at 48.534 kb on + strand at 48.535 kb on - strand at 48.535 kb on - strand at 48.628 kb on - strand, within GFF1455 at 48.684 kb on + strand, within GFF1455 at 48.685 kb on - strand, within GFF1455 at 48.735 kb on + strand, within GFF1455 at 48.736 kb on - strand, within GFF1455 at 48.789 kb on + strand, within GFF1455 at 48.789 kb on + strand, within GFF1455 at 48.789 kb on + strand, within GFF1455 at 48.789 kb on + strand, within GFF1455 at 48.789 kb on + strand, within GFF1455 at 48.789 kb on + strand, within GFF1455 at 48.789 kb on + strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.790 kb on - strand, within GFF1455 at 48.846 kb on + strand, within GFF1455 at 48.846 kb on + strand, within GFF1455 at 48.847 kb on - strand, within GFF1455 at 48.855 kb on + strand, within GFF1455 at 48.855 kb on + strand, within GFF1455 at 48.856 kb on - strand, within GFF1455 at 48.856 kb on - strand, within GFF1455 at 48.856 kb on - strand, within GFF1455 at 48.856 kb on - strand, within GFF1455 at 48.856 kb on - strand, within GFF1455 at 48.856 kb on - strand, within GFF1455 at 48.856 kb on - strand, within GFF1455 at 48.856 kb on - strand, within GFF1455 at 48.951 kb on + strand at 48.952 kb on - strand at 48.977 kb on + strand at 48.977 kb on + strand at 49.070 kb on + strand at 49.070 kb on + strand at 49.070 kb on + strand at 49.070 kb on + strand at 49.070 kb on + strand at 49.071 kb on - strand at 49.071 kb on - strand at 49.071 kb on - strand at 49.071 kb on - strand at 49.072 kb on + strand at 49.073 kb on - strand at 49.078 kb on + strand at 49.078 kb on + strand at 49.078 kb on + strand at 49.078 kb on + strand at 49.078 kb on + strand at 49.079 kb on - strand at 49.079 kb on - strand at 49.079 kb on - strand at 49.080 kb on + strand at 49.080 kb on + strand at 49.081 kb on - strand at 49.081 kb on - strand at 49.081 kb on - strand at 49.081 kb on - strand at 49.081 kb on - strand at 49.081 kb on - strand at 49.084 kb on + strand at 49.085 kb on - strand at 49.085 kb on - strand at 49.107 kb on + strand at 49.107 kb on + strand at 49.127 kb on + strand at 49.128 kb on - strand at 49.156 kb on + strand at 49.156 kb on + strand at 49.157 kb on - strand at 49.157 kb on - strand at 49.157 kb on - strand at 49.162 kb on + strand at 49.162 kb on + strand at 49.163 kb on - strand at 49.163 kb on - strand at 49.163 kb on - strand at 49.163 kb on - strand at 49.163 kb on - strand at 49.304 kb on + strand, within GFF1456 at 49.304 kb on + strand, within GFF1456 at 49.304 kb on + strand, within GFF1456 at 49.304 kb on + strand, within GFF1456 at 49.305 kb on - strand, within GFF1456 at 49.305 kb on - strand, within GFF1456 at 49.452 kb on - strand, within GFF1456 at 49.452 kb on - strand, within GFF1456 at 49.452 kb on - strand, within GFF1456 at 49.468 kb on - strand, within GFF1456 at 49.526 kb on - strand, within GFF1456 at 49.568 kb on + strand, within GFF1456 at 49.568 kb on + strand, within GFF1456 at 49.568 kb on + strand, within GFF1456 at 49.569 kb on - strand, within GFF1456 at 49.569 kb on - strand, within GFF1456 at 49.569 kb on - strand, within GFF1456 at 49.604 kb on + strand, within GFF1456 at 49.605 kb on - strand, within GFF1456 at 49.605 kb on - strand, within GFF1456 at 49.852 kb on + strand, within GFF1456 at 49.852 kb on + strand, within GFF1456 at 49.853 kb on - strand, within GFF1456 at 49.949 kb on + strand, within GFF1456 at 49.950 kb on - strand, within GFF1456
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 47,598 + GFF1454 0.57 -0.8 47,598 + GFF1454 0.57 -1.0 47,598 + GFF1454 0.57 +0.2 47,598 + GFF1454 0.57 -0.0 47,598 + GFF1454 0.57 +0.5 47,598 + GFF1454 0.57 -0.2 47,599 - GFF1454 0.57 -2.1 47,599 - GFF1454 0.57 +0.0 47,710 - GFF1454 0.68 +0.2 47,710 - GFF1454 0.68 -0.4 47,710 - GFF1454 0.68 -0.2 47,760 + GFF1454 0.73 +1.2 47,760 + GFF1454 0.73 +0.4 47,760 + GFF1454 0.73 +0.5 47,760 + GFF1454 0.73 +0.5 47,760 + GFF1454 0.73 -0.1 47,760 + GFF1454 0.73 +0.0 47,761 - GFF1454 0.73 -0.3 47,761 - GFF1454 0.73 +0.0 47,761 - GFF1454 0.73 +0.4 47,761 - GFF1454 0.73 +0.5 47,761 - GFF1454 0.73 +0.0 47,761 - GFF1454 0.73 -0.3 47,761 - GFF1454 0.73 -0.6 47,859 - GFF1454 0.83 +0.8 48,038 + -0.5 48,038 + +0.0 48,039 - -0.4 48,039 - -0.6 48,092 + +0.2 48,093 - -0.9 48,093 - +0.9 48,093 - +0.4 48,093 - -0.5 48,093 - +0.4 48,192 + +0.2 48,192 + -0.7 48,193 - -0.7 48,193 - +0.1 48,264 + -1.3 48,268 + -1.2 48,311 + -0.6 48,311 + -0.1 48,312 - -0.4 48,338 + +0.1 48,346 + +0.3 48,347 - +0.0 48,347 - -0.4 48,392 + +0.9 48,392 + -0.2 48,392 + +0.6 48,392 + -0.7 48,393 - -1.1 48,393 - -0.5 48,393 - +0.3 48,404 + +0.0 48,405 - +0.6 48,405 - +0.1 48,405 - -0.0 48,405 - -0.8 48,412 - +0.6 48,412 - -0.2 48,412 - -0.2 48,412 - +0.3 48,485 + +0.3 48,485 + -0.3 48,486 - -1.4 48,486 - -0.9 48,518 + -0.2 48,518 + +1.0 48,519 - -0.1 48,519 - -1.1 48,519 - -0.4 48,534 + +0.2 48,535 - -0.5 48,535 - +0.1 48,628 - GFF1455 0.10 -0.8 48,684 + GFF1455 0.26 +1.3 48,685 - GFF1455 0.26 +0.6 48,735 + GFF1455 0.40 +1.9 48,736 - GFF1455 0.40 +0.0 48,789 + GFF1455 0.55 +0.7 48,789 + GFF1455 0.55 +0.4 48,789 + GFF1455 0.55 -0.4 48,789 + GFF1455 0.55 -0.2 48,789 + GFF1455 0.55 -0.6 48,789 + GFF1455 0.55 -1.4 48,789 + GFF1455 0.55 +0.6 48,790 - GFF1455 0.55 +1.3 48,790 - GFF1455 0.55 -0.6 48,790 - GFF1455 0.55 -0.5 48,790 - GFF1455 0.55 +2.6 48,790 - GFF1455 0.55 +0.2 48,790 - GFF1455 0.55 +1.0 48,790 - GFF1455 0.55 +0.5 48,790 - GFF1455 0.55 +0.4 48,790 - GFF1455 0.55 -1.2 48,790 - GFF1455 0.55 -0.2 48,790 - GFF1455 0.55 -0.3 48,790 - GFF1455 0.55 +0.1 48,790 - GFF1455 0.55 -1.0 48,790 - GFF1455 0.55 -0.6 48,790 - GFF1455 0.55 -0.4 48,790 - GFF1455 0.55 -1.3 48,846 + GFF1455 0.70 +0.3 48,846 + GFF1455 0.70 -0.9 48,847 - GFF1455 0.71 +0.6 48,855 + GFF1455 0.73 +0.1 48,855 + GFF1455 0.73 +0.0 48,856 - GFF1455 0.73 +0.9 48,856 - GFF1455 0.73 -2.2 48,856 - GFF1455 0.73 +0.1 48,856 - GFF1455 0.73 -1.0 48,856 - GFF1455 0.73 +1.1 48,856 - GFF1455 0.73 -0.4 48,856 - GFF1455 0.73 +0.9 48,856 - GFF1455 0.73 +0.0 48,951 + -1.6 48,952 - -0.4 48,977 + +0.2 48,977 + +1.8 49,070 + -0.3 49,070 + -0.1 49,070 + -0.1 49,070 + +1.1 49,070 + +1.2 49,071 - +0.9 49,071 - -0.4 49,071 - -0.4 49,071 - +0.8 49,072 + -1.2 49,073 - +0.9 49,078 + +0.2 49,078 + +0.3 49,078 + -0.6 49,078 + -0.4 49,078 + -0.2 49,079 - -1.2 49,079 - -0.1 49,079 - -0.3 49,080 + +0.0 49,080 + -0.2 49,081 - +1.1 49,081 - -0.1 49,081 - +0.0 49,081 - -1.2 49,081 - -0.3 49,081 - -1.4 49,084 + +1.6 49,085 - -0.6 49,085 - -1.2 49,107 + -0.1 49,107 + +0.3 49,127 + -0.1 49,128 - +0.4 49,156 + -0.3 49,156 + -0.6 49,157 - -0.0 49,157 - +0.4 49,157 - -0.4 49,162 + -0.3 49,162 + -0.3 49,163 - -1.6 49,163 - -0.6 49,163 - +0.3 49,163 - +0.7 49,163 - -0.2 49,304 + GFF1456 0.14 -2.1 49,304 + GFF1456 0.14 +1.1 49,304 + GFF1456 0.14 +0.0 49,304 + GFF1456 0.14 -0.6 49,305 - GFF1456 0.14 +0.1 49,305 - GFF1456 0.14 -0.1 49,452 - GFF1456 0.28 -0.0 49,452 - GFF1456 0.28 -0.8 49,452 - GFF1456 0.28 -0.2 49,468 - GFF1456 0.29 -1.3 49,526 - GFF1456 0.35 -0.7 49,568 + GFF1456 0.39 +0.9 49,568 + GFF1456 0.39 -0.2 49,568 + GFF1456 0.39 +0.5 49,569 - GFF1456 0.39 +0.6 49,569 - GFF1456 0.39 -0.2 49,569 - GFF1456 0.39 +1.9 49,604 + GFF1456 0.42 -0.7 49,605 - GFF1456 0.43 +1.6 49,605 - GFF1456 0.43 +1.2 49,852 + GFF1456 0.66 -0.1 49,852 + GFF1456 0.66 -0.7 49,853 - GFF1456 0.66 +0.6 49,949 + GFF1456 0.76 +0.2 49,950 - GFF1456 0.76 +0.3
Or see this region's nucleotide sequence