Strain Fitness in Variovorax sp. SCN45 around GFF1438

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1437 and GFF1438 are separated by 81 nucleotidesGFF1438 and GFF1439 are separated by 277 nucleotides GFF1437 - Transcriptional regulator, LysR family, at 28,005 to 28,901 GFF1437 GFF1438 - no description, at 28,983 to 29,237 GFF1438 GFF1439 - putative inositol monophosphatase, at 29,515 to 30,348 GFF1439 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1at 28.012 kb on + strandat 28.012 kb on + strandat 28.012 kb on + strandat 28.012 kb on + strandat 28.204 kb on - strand, within GFF1437at 28.204 kb on - strand, within GFF1437at 28.223 kb on - strand, within GFF1437at 28.494 kb on + strand, within GFF1437at 28.494 kb on + strand, within GFF1437at 28.495 kb on - strand, within GFF1437at 28.495 kb on - strand, within GFF1437at 28.495 kb on - strand, within GFF1437at 28.495 kb on - strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.732 kb on - strand, within GFF1437at 28.732 kb on - strand, within GFF1437at 28.732 kb on - strand, within GFF1437at 28.827 kb on + strandat 28.827 kb on + strandat 28.827 kb on + strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.829 kb on + strandat 28.829 kb on + strandat 28.829 kb on + strandat 28.829 kb on + strandat 28.830 kb on - strandat 28.830 kb on - strandat 28.830 kb on - strandat 28.842 kb on + strandat 28.842 kb on + strandat 28.843 kb on - strandat 28.900 kb on - strandat 29.056 kb on + strand, within GFF1438at 29.056 kb on + strand, within GFF1438at 29.056 kb on + strand, within GFF1438at 29.056 kb on + strand, within GFF1438at 29.056 kb on + strand, within GFF1438at 29.057 kb on - strand, within GFF1438at 29.057 kb on - strand, within GFF1438at 29.057 kb on - strand, within GFF1438at 29.057 kb on - strand, within GFF1438at 29.074 kb on + strand, within GFF1438at 29.075 kb on - strand, within GFF1438at 29.163 kb on - strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.185 kb on + strand, within GFF1438at 29.186 kb on - strand, within GFF1438at 29.186 kb on - strand, within GFF1438at 29.224 kb on - strandat 29.363 kb on + strandat 29.363 kb on + strandat 29.363 kb on + strandat 29.363 kb on + strandat 29.364 kb on - strandat 29.364 kb on - strandat 29.364 kb on - strandat 29.364 kb on - strandat 29.364 kb on - strandat 29.549 kb on + strandat 29.550 kb on - strandat 30.167 kb on - strand, within GFF1439at 30.167 kb on - strand, within GFF1439

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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28,012 + +0.1
28,012 + +0.0
28,012 + -0.2
28,012 + -0.1
28,204 - GFF1437 0.22 +0.6
28,204 - GFF1437 0.22 -0.4
28,223 - GFF1437 0.24 -0.1
28,494 + GFF1437 0.55 +0.5
28,494 + GFF1437 0.55 +0.0
28,495 - GFF1437 0.55 -0.5
28,495 - GFF1437 0.55 -0.3
28,495 - GFF1437 0.55 -1.7
28,495 - GFF1437 0.55 -0.3
28,731 + GFF1437 0.81 +0.6
28,731 + GFF1437 0.81 -1.8
28,731 + GFF1437 0.81 +0.4
28,731 + GFF1437 0.81 -0.5
28,731 + GFF1437 0.81 +0.0
28,731 + GFF1437 0.81 +0.2
28,731 + GFF1437 0.81 +1.0
28,731 + GFF1437 0.81 -1.2
28,731 + GFF1437 0.81 -0.1
28,732 - GFF1437 0.81 -0.8
28,732 - GFF1437 0.81 -1.6
28,732 - GFF1437 0.81 -0.2
28,827 + -0.2
28,827 + -0.6
28,827 + +0.6
28,828 - -0.4
28,828 - -0.5
28,828 - -0.5
28,828 - +0.0
28,828 - -1.0
28,828 - -0.3
28,828 - -0.3
28,828 - -0.3
28,829 + +0.4
28,829 + -0.2
28,829 + -1.6
28,829 + +0.1
28,830 - -0.7
28,830 - -0.2
28,830 - +1.6
28,842 + +0.8
28,842 + -0.8
28,843 - +0.2
28,900 - -0.2
29,056 + GFF1438 0.29 -0.2
29,056 + GFF1438 0.29 +0.5
29,056 + GFF1438 0.29 -0.8
29,056 + GFF1438 0.29 +1.6
29,056 + GFF1438 0.29 -0.0
29,057 - GFF1438 0.29 +0.5
29,057 - GFF1438 0.29 +0.6
29,057 - GFF1438 0.29 +0.1
29,057 - GFF1438 0.29 +1.3
29,074 + GFF1438 0.36 -0.1
29,075 - GFF1438 0.36 +0.4
29,163 - GFF1438 0.71 +1.6
29,185 + GFF1438 0.79 +0.1
29,185 + GFF1438 0.79 +1.6
29,185 + GFF1438 0.79 -0.4
29,185 + GFF1438 0.79 +0.0
29,185 + GFF1438 0.79 -0.7
29,185 + GFF1438 0.79 +0.8
29,185 + GFF1438 0.79 +0.9
29,185 + GFF1438 0.79 +0.8
29,186 - GFF1438 0.80 +0.7
29,186 - GFF1438 0.80 -0.5
29,224 - -0.9
29,363 + +0.6
29,363 + +1.1
29,363 + -0.9
29,363 + -0.1
29,364 - -0.7
29,364 - -0.4
29,364 - +0.6
29,364 - +0.3
29,364 - -0.1
29,549 + -0.2
29,550 - +0.0
30,167 - GFF1439 0.78 -0.1
30,167 - GFF1439 0.78 -0.1

Or see this region's nucleotide sequence