Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1397 and GFF1398 are separated by 42 nucleotides GFF1398 and GFF1399 are separated by 34 nucleotides
GFF1397 - TRAP-type C4-dicarboxylate transport system, large permease component, at 745,092 to 746,990
GFF1397
GFF1398 - Transcriptional regulator, LacI family, at 747,033 to 748,082
GFF1398
GFF1399 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 748,117 to 749,118
GFF1399
Position (kb) 747
748
749 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 746.277 kb on + strand, within GFF1397 at 746.277 kb on + strand, within GFF1397 at 746.277 kb on + strand, within GFF1397 at 746.277 kb on + strand, within GFF1397 at 746.278 kb on - strand, within GFF1397 at 746.278 kb on - strand, within GFF1397 at 746.278 kb on - strand, within GFF1397 at 746.278 kb on - strand, within GFF1397 at 746.442 kb on + strand, within GFF1397 at 746.442 kb on + strand, within GFF1397 at 746.442 kb on + strand, within GFF1397 at 746.443 kb on - strand, within GFF1397 at 746.443 kb on - strand, within GFF1397 at 746.443 kb on - strand, within GFF1397 at 746.443 kb on - strand, within GFF1397 at 746.602 kb on - strand, within GFF1397 at 746.602 kb on - strand, within GFF1397 at 746.904 kb on + strand at 746.905 kb on - strand at 747.255 kb on + strand, within GFF1398 at 747.255 kb on + strand, within GFF1398 at 747.255 kb on + strand, within GFF1398 at 747.256 kb on - strand, within GFF1398 at 747.256 kb on - strand, within GFF1398 at 747.330 kb on + strand, within GFF1398 at 747.331 kb on - strand, within GFF1398 at 747.469 kb on - strand, within GFF1398 at 747.469 kb on - strand, within GFF1398 at 747.469 kb on - strand, within GFF1398 at 748.162 kb on + strand at 748.163 kb on - strand at 748.163 kb on - strand at 748.163 kb on - strand at 748.510 kb on + strand, within GFF1399
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 746,277 + GFF1397 0.62 -0.4 746,277 + GFF1397 0.62 +0.2 746,277 + GFF1397 0.62 -1.0 746,277 + GFF1397 0.62 +3.0 746,278 - GFF1397 0.62 -0.2 746,278 - GFF1397 0.62 +0.7 746,278 - GFF1397 0.62 -1.1 746,278 - GFF1397 0.62 -1.0 746,442 + GFF1397 0.71 +0.4 746,442 + GFF1397 0.71 -0.2 746,442 + GFF1397 0.71 -0.3 746,443 - GFF1397 0.71 +0.4 746,443 - GFF1397 0.71 -0.7 746,443 - GFF1397 0.71 -1.9 746,443 - GFF1397 0.71 -0.1 746,602 - GFF1397 0.80 -0.2 746,602 - GFF1397 0.80 +0.0 746,904 + -0.1 746,905 - +0.6 747,255 + GFF1398 0.21 -0.4 747,255 + GFF1398 0.21 -0.4 747,255 + GFF1398 0.21 -0.3 747,256 - GFF1398 0.21 -0.1 747,256 - GFF1398 0.21 -0.9 747,330 + GFF1398 0.28 -0.3 747,331 - GFF1398 0.28 +0.4 747,469 - GFF1398 0.42 +0.6 747,469 - GFF1398 0.42 +1.1 747,469 - GFF1398 0.42 +0.4 748,162 + -1.0 748,163 - -0.9 748,163 - +0.9 748,163 - -0.5 748,510 + GFF1399 0.39 +1.1
Or see this region's nucleotide sequence