Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1265 and GFF1266 are separated by 66 nucleotides GFF1266 and GFF1267 are separated by 4 nucleotides
GFF1265 - cAMP-binding protein, at 580,449 to 581,381
GFF1265
GFF1266 - Cysteine desulfurase (EC 2.8.1.7), at 581,448 to 583,253
GFF1266
GFF1267 - Probable lipoprotein signal peptide, at 583,258 to 584,262
GFF1267
Position (kb) 581
582
583
584 Strain fitness (log2 ratio) -1
0
1 at 580.599 kb on + strand, within GFF1265 at 580.600 kb on - strand, within GFF1265 at 580.770 kb on + strand, within GFF1265 at 581.271 kb on + strand, within GFF1265 at 581.272 kb on - strand, within GFF1265 at 581.287 kb on - strand, within GFF1265 at 581.352 kb on + strand at 581.353 kb on - strand at 581.353 kb on - strand at 581.373 kb on + strand at 581.373 kb on + strand at 581.374 kb on - strand at 581.374 kb on - strand at 581.379 kb on + strand at 581.380 kb on - strand at 581.380 kb on - strand at 581.612 kb on + strand at 581.613 kb on - strand at 581.925 kb on + strand, within GFF1266 at 581.925 kb on + strand, within GFF1266 at 582.820 kb on + strand, within GFF1266 at 582.820 kb on + strand, within GFF1266 at 582.821 kb on - strand, within GFF1266 at 582.821 kb on - strand, within GFF1266 at 582.900 kb on + strand, within GFF1266 at 582.901 kb on - strand, within GFF1266 at 582.901 kb on - strand, within GFF1266 at 582.901 kb on - strand, within GFF1266 at 582.957 kb on + strand, within GFF1266 at 582.958 kb on - strand, within GFF1266 at 582.958 kb on - strand, within GFF1266 at 583.051 kb on - strand, within GFF1266 at 583.179 kb on + strand at 583.179 kb on + strand at 583.180 kb on - strand at 583.782 kb on - strand, within GFF1267 at 583.997 kb on + strand, within GFF1267
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 580,599 + GFF1265 0.16 -0.4 580,600 - GFF1265 0.16 +0.8 580,770 + GFF1265 0.34 +0.4 581,271 + GFF1265 0.88 -0.9 581,272 - GFF1265 0.88 -0.5 581,287 - GFF1265 0.90 -1.4 581,352 + -0.9 581,353 - -0.5 581,353 - -0.3 581,373 + -1.1 581,373 + -0.8 581,374 - -0.9 581,374 - -0.7 581,379 + -0.1 581,380 - -1.0 581,380 - -0.3 581,612 + -0.8 581,613 - +1.4 581,925 + GFF1266 0.26 -0.5 581,925 + GFF1266 0.26 -0.8 582,820 + GFF1266 0.76 +0.0 582,820 + GFF1266 0.76 -0.7 582,821 - GFF1266 0.76 -0.5 582,821 - GFF1266 0.76 -0.6 582,900 + GFF1266 0.80 +0.2 582,901 - GFF1266 0.80 -0.3 582,901 - GFF1266 0.80 +0.9 582,901 - GFF1266 0.80 -0.6 582,957 + GFF1266 0.84 -0.4 582,958 - GFF1266 0.84 +0.9 582,958 - GFF1266 0.84 -0.1 583,051 - GFF1266 0.89 -0.8 583,179 + -0.4 583,179 + -0.5 583,180 - -1.6 583,782 - GFF1267 0.52 -0.1 583,997 + GFF1267 0.74 +1.4
Or see this region's nucleotide sequence