Strain Fitness in Variovorax sp. SCN45 around GFF1239

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1237 and GFF1238 are separated by 98 nucleotidesGFF1238 and GFF1239 overlap by 1 nucleotidesGFF1239 and GFF1240 are separated by 78 nucleotides GFF1237 - Methionine sulfoxide reductase cytochrome b subunit, at 555,846 to 556,502 GFF1237 GFF1238 - Two-component transcriptional response regulator, OmpR family, at 556,601 to 557,326 GFF1238 GFF1239 - Two-component system sensor histidine kinase, at 557,326 to 558,822 GFF1239 GFF1240 - Enoyl-CoA hydratase (EC 4.2.1.17), at 558,901 to 559,824 GFF1240 Position (kb) 557 558 559Strain fitness (log2 ratio) -2 -1 0 1 2at 556.351 kb on + strand, within GFF1237at 556.555 kb on + strandat 556.555 kb on + strandat 556.556 kb on - strandat 556.556 kb on - strandat 556.556 kb on - strandat 556.685 kb on + strand, within GFF1238at 556.685 kb on + strand, within GFF1238at 556.826 kb on + strand, within GFF1238at 556.826 kb on + strand, within GFF1238at 556.826 kb on + strand, within GFF1238at 556.827 kb on - strand, within GFF1238at 556.827 kb on - strand, within GFF1238at 556.827 kb on - strand, within GFF1238at 556.904 kb on + strand, within GFF1238at 556.904 kb on + strand, within GFF1238at 556.904 kb on + strand, within GFF1238at 556.905 kb on - strand, within GFF1238at 556.905 kb on - strand, within GFF1238at 556.905 kb on - strand, within GFF1238at 557.105 kb on + strand, within GFF1238at 557.105 kb on + strand, within GFF1238at 557.106 kb on - strand, within GFF1238at 557.172 kb on - strand, within GFF1238at 557.186 kb on + strand, within GFF1238at 557.285 kb on + strandat 557.285 kb on + strandat 557.286 kb on - strandat 557.286 kb on - strandat 557.581 kb on + strand, within GFF1239at 557.581 kb on + strand, within GFF1239at 557.581 kb on + strand, within GFF1239at 557.582 kb on - strand, within GFF1239at 557.582 kb on - strand, within GFF1239at 557.582 kb on - strand, within GFF1239at 557.582 kb on - strand, within GFF1239at 557.582 kb on - strand, within GFF1239at 557.782 kb on + strand, within GFF1239at 557.783 kb on - strand, within GFF1239at 557.783 kb on - strand, within GFF1239at 557.783 kb on - strand, within GFF1239at 557.783 kb on - strand, within GFF1239at 557.783 kb on - strand, within GFF1239at 557.788 kb on + strand, within GFF1239at 557.788 kb on + strand, within GFF1239at 557.788 kb on + strand, within GFF1239at 557.788 kb on + strand, within GFF1239at 557.788 kb on + strand, within GFF1239at 557.788 kb on + strand, within GFF1239at 557.788 kb on + strand, within GFF1239at 557.788 kb on + strand, within GFF1239at 557.788 kb on + strand, within GFF1239at 557.789 kb on - strand, within GFF1239at 557.789 kb on - strand, within GFF1239at 558.190 kb on + strand, within GFF1239at 558.247 kb on + strand, within GFF1239at 558.326 kb on - strand, within GFF1239at 558.855 kb on + strandat 558.855 kb on + strandat 558.855 kb on + strandat 558.855 kb on + strandat 558.855 kb on + strandat 558.855 kb on + strandat 558.855 kb on + strandat 558.855 kb on + strandat 558.856 kb on - strandat 558.856 kb on - strandat 558.856 kb on - strandat 558.856 kb on - strandat 558.856 kb on - strandat 558.856 kb on - strandat 558.856 kb on - strandat 558.856 kb on - strandat 558.856 kb on - strandat 559.020 kb on - strand, within GFF1240at 559.020 kb on - strand, within GFF1240at 559.120 kb on + strand, within GFF1240at 559.120 kb on + strand, within GFF1240at 559.121 kb on - strand, within GFF1240at 559.121 kb on - strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.201 kb on + strand, within GFF1240at 559.202 kb on - strand, within GFF1240at 559.202 kb on - strand, within GFF1240at 559.357 kb on + strand, within GFF1240at 559.357 kb on + strand, within GFF1240at 559.357 kb on + strand, within GFF1240at 559.358 kb on - strand, within GFF1240at 559.358 kb on - strand, within GFF1240at 559.358 kb on - strand, within GFF1240at 559.406 kb on - strand, within GFF1240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
556,351 + GFF1237 0.77 +0.3
556,555 + +0.2
556,555 + -0.8
556,556 - -1.5
556,556 - +2.2
556,556 - +1.4
556,685 + GFF1238 0.12 -1.1
556,685 + GFF1238 0.12 +0.0
556,826 + GFF1238 0.31 +0.1
556,826 + GFF1238 0.31 -0.1
556,826 + GFF1238 0.31 -1.4
556,827 - GFF1238 0.31 +0.2
556,827 - GFF1238 0.31 -0.2
556,827 - GFF1238 0.31 +0.3
556,904 + GFF1238 0.42 +0.8
556,904 + GFF1238 0.42 -0.7
556,904 + GFF1238 0.42 +0.4
556,905 - GFF1238 0.42 -0.1
556,905 - GFF1238 0.42 +0.0
556,905 - GFF1238 0.42 -0.3
557,105 + GFF1238 0.69 -0.1
557,105 + GFF1238 0.69 -0.0
557,106 - GFF1238 0.70 -0.1
557,172 - GFF1238 0.79 -0.9
557,186 + GFF1238 0.81 +0.4
557,285 + +1.3
557,285 + +0.4
557,286 - +0.8
557,286 - +0.6
557,581 + GFF1239 0.17 -0.3
557,581 + GFF1239 0.17 -0.7
557,581 + GFF1239 0.17 -0.5
557,582 - GFF1239 0.17 +0.9
557,582 - GFF1239 0.17 -0.4
557,582 - GFF1239 0.17 -0.5
557,582 - GFF1239 0.17 -1.9
557,582 - GFF1239 0.17 -0.6
557,782 + GFF1239 0.30 -0.3
557,783 - GFF1239 0.31 -0.7
557,783 - GFF1239 0.31 -1.6
557,783 - GFF1239 0.31 -0.7
557,783 - GFF1239 0.31 +0.6
557,783 - GFF1239 0.31 +0.1
557,788 + GFF1239 0.31 -0.1
557,788 + GFF1239 0.31 +0.7
557,788 + GFF1239 0.31 -1.2
557,788 + GFF1239 0.31 +1.0
557,788 + GFF1239 0.31 +1.4
557,788 + GFF1239 0.31 -0.7
557,788 + GFF1239 0.31 -0.2
557,788 + GFF1239 0.31 +0.3
557,788 + GFF1239 0.31 +0.0
557,789 - GFF1239 0.31 +0.1
557,789 - GFF1239 0.31 -1.4
558,190 + GFF1239 0.58 -0.1
558,247 + GFF1239 0.62 -0.1
558,326 - GFF1239 0.67 -0.9
558,855 + -0.4
558,855 + +1.0
558,855 + +0.6
558,855 + +0.4
558,855 + -0.4
558,855 + -0.1
558,855 + -0.7
558,855 + -0.2
558,856 - -0.4
558,856 - +0.4
558,856 - -1.0
558,856 - -0.6
558,856 - -0.0
558,856 - -0.0
558,856 - +0.2
558,856 - +1.1
558,856 - -0.5
559,020 - GFF1240 0.13 +0.3
559,020 - GFF1240 0.13 -0.3
559,120 + GFF1240 0.24 -0.1
559,120 + GFF1240 0.24 +1.0
559,121 - GFF1240 0.24 -0.8
559,121 - GFF1240 0.24 -0.1
559,201 + GFF1240 0.32 -1.6
559,201 + GFF1240 0.32 -1.8
559,201 + GFF1240 0.32 +0.1
559,201 + GFF1240 0.32 -0.5
559,201 + GFF1240 0.32 +0.1
559,201 + GFF1240 0.32 +0.4
559,201 + GFF1240 0.32 +0.0
559,201 + GFF1240 0.32 -1.1
559,202 - GFF1240 0.33 +0.0
559,202 - GFF1240 0.33 -0.2
559,357 + GFF1240 0.49 -2.3
559,357 + GFF1240 0.49 -0.8
559,357 + GFF1240 0.49 -0.4
559,358 - GFF1240 0.49 +1.0
559,358 - GFF1240 0.49 +0.1
559,358 - GFF1240 0.49 -0.3
559,406 - GFF1240 0.55 -1.4

Or see this region's nucleotide sequence