Strain Fitness in Variovorax sp. SCN45 around GFF1193

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1191 and GFF1192 are separated by 122 nucleotidesGFF1192 and GFF1193 are separated by 90 nucleotidesGFF1193 and GFF1194 overlap by 27 nucleotidesGFF1194 and GFF1195 overlap by 4 nucleotides GFF1191 - Predicted hydroxymethylpyrimidine transporter CytX, at 508,776 to 510,110 GFF1191 GFF1192 - no description, at 510,233 to 510,406 GFF1192 GFF1193 - Adenylate cyclase (EC 4.6.1.1), at 510,497 to 512,395 GFF1193 GFF1194 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 512,369 to 513,343 GFF1194 GFF1195 - iron-sulphur protein, at 513,340 to 514,575 GFF1195 Position (kb) 510 511 512 513Strain fitness (log2 ratio) -2 -1 0 1 2at 509.821 kb on + strand, within GFF1191at 509.821 kb on + strand, within GFF1191at 509.821 kb on + strand, within GFF1191at 509.821 kb on + strand, within GFF1191at 509.822 kb on - strand, within GFF1191at 509.822 kb on - strand, within GFF1191at 509.822 kb on - strand, within GFF1191at 509.962 kb on + strand, within GFF1191at 509.962 kb on + strand, within GFF1191at 509.962 kb on + strand, within GFF1191at 509.963 kb on - strand, within GFF1191at 510.219 kb on + strandat 510.219 kb on + strandat 510.219 kb on + strandat 510.219 kb on + strandat 510.220 kb on - strandat 510.278 kb on - strand, within GFF1192at 510.278 kb on - strand, within GFF1192at 510.278 kb on - strand, within GFF1192at 510.278 kb on - strand, within GFF1192at 510.319 kb on + strand, within GFF1192at 510.935 kb on + strand, within GFF1193at 510.935 kb on + strand, within GFF1193at 510.935 kb on + strand, within GFF1193at 510.935 kb on + strand, within GFF1193at 510.935 kb on + strand, within GFF1193at 510.936 kb on - strand, within GFF1193at 510.936 kb on - strand, within GFF1193at 510.936 kb on - strand, within GFF1193at 510.936 kb on - strand, within GFF1193at 511.005 kb on - strand, within GFF1193at 511.427 kb on + strand, within GFF1193at 511.427 kb on + strand, within GFF1193at 511.427 kb on + strand, within GFF1193at 511.524 kb on + strand, within GFF1193at 511.524 kb on + strand, within GFF1193at 511.525 kb on - strand, within GFF1193at 511.913 kb on + strand, within GFF1193at 511.913 kb on + strand, within GFF1193at 511.913 kb on + strand, within GFF1193at 511.914 kb on - strand, within GFF1193at 512.027 kb on + strand, within GFF1193at 512.183 kb on + strand, within GFF1193at 512.183 kb on + strand, within GFF1193at 512.183 kb on + strand, within GFF1193at 512.183 kb on + strand, within GFF1193at 512.183 kb on + strand, within GFF1193at 512.184 kb on - strand, within GFF1193at 512.184 kb on - strand, within GFF1193at 512.360 kb on + strandat 512.360 kb on + strandat 512.360 kb on + strandat 512.360 kb on + strandat 512.361 kb on - strandat 512.370 kb on + strandat 512.370 kb on + strandat 512.370 kb on + strandat 512.370 kb on + strandat 512.370 kb on + strandat 512.371 kb on - strandat 512.371 kb on - strandat 512.371 kb on - strandat 512.457 kb on + strandat 512.457 kb on + strandat 512.457 kb on + strandat 512.457 kb on + strandat 512.458 kb on - strandat 512.458 kb on - strandat 512.458 kb on - strandat 512.458 kb on - strandat 512.671 kb on - strand, within GFF1194at 512.757 kb on + strand, within GFF1194at 512.757 kb on + strand, within GFF1194at 512.757 kb on + strand, within GFF1194at 512.757 kb on + strand, within GFF1194at 512.757 kb on + strand, within GFF1194at 512.757 kb on + strand, within GFF1194at 512.757 kb on + strand, within GFF1194at 512.757 kb on + strand, within GFF1194at 512.757 kb on + strand, within GFF1194at 512.757 kb on + strand, within GFF1194at 512.757 kb on + strand, within GFF1194at 512.758 kb on - strand, within GFF1194at 512.758 kb on - strand, within GFF1194at 512.758 kb on - strand, within GFF1194at 512.758 kb on - strand, within GFF1194at 512.758 kb on - strand, within GFF1194at 512.758 kb on - strand, within GFF1194at 512.758 kb on - strand, within GFF1194at 512.758 kb on - strand, within GFF1194at 512.758 kb on - strand, within GFF1194at 512.758 kb on - strand, within GFF1194at 512.758 kb on - strand, within GFF1194at 512.758 kb on - strand, within GFF1194at 512.758 kb on - strand, within GFF1194at 512.843 kb on + strand, within GFF1194at 512.843 kb on + strand, within GFF1194at 512.843 kb on + strand, within GFF1194at 512.843 kb on + strand, within GFF1194at 512.843 kb on + strand, within GFF1194at 512.843 kb on + strand, within GFF1194at 512.843 kb on + strand, within GFF1194at 512.843 kb on + strand, within GFF1194at 512.844 kb on - strand, within GFF1194at 512.844 kb on - strand, within GFF1194at 512.844 kb on - strand, within GFF1194at 512.844 kb on - strand, within GFF1194at 512.844 kb on - strand, within GFF1194at 512.844 kb on - strand, within GFF1194at 512.844 kb on - strand, within GFF1194at 513.174 kb on + strand, within GFF1194at 513.175 kb on - strand, within GFF1194

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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509,821 + GFF1191 0.78 -0.1
509,821 + GFF1191 0.78 +0.0
509,821 + GFF1191 0.78 +0.1
509,821 + GFF1191 0.78 +0.3
509,822 - GFF1191 0.78 -0.1
509,822 - GFF1191 0.78 +2.5
509,822 - GFF1191 0.78 -2.0
509,962 + GFF1191 0.89 -0.6
509,962 + GFF1191 0.89 +0.9
509,962 + GFF1191 0.89 +0.0
509,963 - GFF1191 0.89 +0.2
510,219 + -0.5
510,219 + -0.7
510,219 + -0.5
510,219 + +0.5
510,220 - +0.2
510,278 - GFF1192 0.26 +0.5
510,278 - GFF1192 0.26 -0.5
510,278 - GFF1192 0.26 -0.1
510,278 - GFF1192 0.26 -0.6
510,319 + GFF1192 0.49 +0.6
510,935 + GFF1193 0.23 +1.4
510,935 + GFF1193 0.23 -0.7
510,935 + GFF1193 0.23 -0.9
510,935 + GFF1193 0.23 -2.1
510,935 + GFF1193 0.23 -1.4
510,936 - GFF1193 0.23 -1.2
510,936 - GFF1193 0.23 +0.0
510,936 - GFF1193 0.23 -0.1
510,936 - GFF1193 0.23 -1.2
511,005 - GFF1193 0.27 +0.2
511,427 + GFF1193 0.49 +0.9
511,427 + GFF1193 0.49 -0.4
511,427 + GFF1193 0.49 -0.1
511,524 + GFF1193 0.54 +0.4
511,524 + GFF1193 0.54 -2.3
511,525 - GFF1193 0.54 -0.4
511,913 + GFF1193 0.75 -0.6
511,913 + GFF1193 0.75 -0.3
511,913 + GFF1193 0.75 +0.4
511,914 - GFF1193 0.75 +1.0
512,027 + GFF1193 0.81 -1.9
512,183 + GFF1193 0.89 -0.3
512,183 + GFF1193 0.89 -1.3
512,183 + GFF1193 0.89 -0.5
512,183 + GFF1193 0.89 +0.2
512,183 + GFF1193 0.89 -0.1
512,184 - GFF1193 0.89 -0.5
512,184 - GFF1193 0.89 +2.3
512,360 + +0.1
512,360 + +0.4
512,360 + +0.2
512,360 + +0.5
512,361 - -1.0
512,370 + -1.5
512,370 + +0.2
512,370 + -0.4
512,370 + -0.2
512,370 + -1.1
512,371 - -0.5
512,371 - -0.9
512,371 - +1.6
512,457 + -0.8
512,457 + +1.3
512,457 + -1.2
512,457 + -0.3
512,458 - +0.1
512,458 - +0.3
512,458 - -0.1
512,458 - -1.4
512,671 - GFF1194 0.31 +0.7
512,757 + GFF1194 0.40 -0.1
512,757 + GFF1194 0.40 -0.6
512,757 + GFF1194 0.40 -0.1
512,757 + GFF1194 0.40 -0.3
512,757 + GFF1194 0.40 +0.3
512,757 + GFF1194 0.40 -0.1
512,757 + GFF1194 0.40 -0.2
512,757 + GFF1194 0.40 -0.2
512,757 + GFF1194 0.40 +0.2
512,757 + GFF1194 0.40 -1.0
512,757 + GFF1194 0.40 +0.1
512,758 - GFF1194 0.40 -0.1
512,758 - GFF1194 0.40 +0.4
512,758 - GFF1194 0.40 -0.4
512,758 - GFF1194 0.40 +1.4
512,758 - GFF1194 0.40 -0.7
512,758 - GFF1194 0.40 +1.0
512,758 - GFF1194 0.40 -0.6
512,758 - GFF1194 0.40 -0.4
512,758 - GFF1194 0.40 -0.4
512,758 - GFF1194 0.40 -0.1
512,758 - GFF1194 0.40 -0.7
512,758 - GFF1194 0.40 -2.2
512,758 - GFF1194 0.40 -0.6
512,843 + GFF1194 0.49 -0.5
512,843 + GFF1194 0.49 +0.0
512,843 + GFF1194 0.49 -0.2
512,843 + GFF1194 0.49 -0.9
512,843 + GFF1194 0.49 -0.0
512,843 + GFF1194 0.49 -0.1
512,843 + GFF1194 0.49 +0.1
512,843 + GFF1194 0.49 -2.0
512,844 - GFF1194 0.49 -0.5
512,844 - GFF1194 0.49 -0.2
512,844 - GFF1194 0.49 -1.1
512,844 - GFF1194 0.49 -0.1
512,844 - GFF1194 0.49 +0.3
512,844 - GFF1194 0.49 -0.1
512,844 - GFF1194 0.49 +0.9
513,174 + GFF1194 0.83 +0.9
513,175 - GFF1194 0.83 +1.9

Or see this region's nucleotide sequence