Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1068 and GFF1069 overlap by 4 nucleotides GFF1069 and GFF1070 are separated by 63 nucleotides GFF1070 and GFF1071 are separated by 58 nucleotides GFF1071 and GFF1072 are separated by 70 nucleotides
GFF1068 - Beta-ureidopropionase (EC 3.5.1.6), at 381,114 to 382,403
GFF1068
GFF1069 - hypothetical protein, at 382,400 to 383,335
GFF1069
GFF1070 - no description, at 383,399 to 383,665
GFF1070
GFF1071 - no description, at 383,724 to 384,020
GFF1071
GFF1072 - no description, at 384,091 to 384,279
GFF1072
Position (kb) 382
383
384 Strain fitness (log2 ratio) -2
-1
0
1 at 381.436 kb on + strand, within GFF1068 at 381.715 kb on - strand, within GFF1068 at 381.728 kb on + strand, within GFF1068 at 381.859 kb on - strand, within GFF1068 at 382.371 kb on + strand at 382.644 kb on - strand, within GFF1069 at 382.709 kb on + strand, within GFF1069 at 382.709 kb on + strand, within GFF1069 at 382.710 kb on - strand, within GFF1069 at 382.710 kb on - strand, within GFF1069 at 383.107 kb on + strand, within GFF1069 at 383.108 kb on - strand, within GFF1069 at 383.350 kb on + strand at 383.350 kb on + strand at 383.351 kb on - strand at 383.413 kb on + strand at 383.413 kb on + strand at 383.413 kb on + strand at 383.414 kb on - strand at 383.414 kb on - strand at 383.414 kb on - strand at 383.414 kb on - strand at 383.414 kb on - strand at 383.414 kb on - strand at 383.414 kb on - strand at 383.414 kb on - strand at 383.414 kb on - strand at 383.419 kb on + strand at 383.419 kb on + strand at 383.419 kb on + strand at 383.419 kb on + strand at 383.419 kb on + strand at 383.420 kb on - strand at 383.420 kb on - strand at 383.420 kb on - strand at 383.420 kb on - strand at 383.457 kb on - strand, within GFF1070 at 383.457 kb on - strand, within GFF1070 at 383.537 kb on + strand, within GFF1070 at 383.537 kb on + strand, within GFF1070 at 383.537 kb on + strand, within GFF1070 at 383.537 kb on + strand, within GFF1070 at 383.537 kb on + strand, within GFF1070 at 383.537 kb on + strand, within GFF1070 at 383.538 kb on - strand, within GFF1070 at 383.561 kb on + strand, within GFF1070 at 383.562 kb on - strand, within GFF1070 at 383.562 kb on - strand, within GFF1070 at 383.562 kb on - strand, within GFF1070 at 383.562 kb on - strand, within GFF1070 at 383.685 kb on + strand at 383.685 kb on + strand at 383.685 kb on + strand at 383.685 kb on + strand at 383.685 kb on + strand at 383.685 kb on + strand at 383.685 kb on + strand at 383.686 kb on - strand at 383.686 kb on - strand at 383.686 kb on - strand at 383.760 kb on + strand, within GFF1071 at 383.760 kb on + strand, within GFF1071 at 383.760 kb on + strand, within GFF1071 at 383.760 kb on + strand, within GFF1071 at 383.761 kb on - strand, within GFF1071 at 383.761 kb on - strand, within GFF1071 at 383.857 kb on - strand, within GFF1071 at 383.857 kb on - strand, within GFF1071 at 383.916 kb on - strand, within GFF1071 at 383.937 kb on + strand, within GFF1071 at 383.937 kb on + strand, within GFF1071 at 383.937 kb on + strand, within GFF1071 at 383.937 kb on + strand, within GFF1071 at 383.937 kb on + strand, within GFF1071 at 383.938 kb on - strand, within GFF1071 at 383.938 kb on - strand, within GFF1071 at 384.056 kb on + strand at 384.056 kb on + strand at 384.056 kb on + strand at 384.056 kb on + strand at 384.057 kb on - strand at 384.057 kb on - strand at 384.057 kb on - strand at 384.057 kb on - strand at 384.057 kb on - strand at 384.102 kb on + strand at 384.217 kb on + strand, within GFF1072 at 384.218 kb on - strand, within GFF1072 at 384.218 kb on - strand, within GFF1072 at 384.265 kb on + strand at 384.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 381,436 + GFF1068 0.25 -0.0 381,715 - GFF1068 0.47 -0.6 381,728 + GFF1068 0.48 -0.6 381,859 - GFF1068 0.58 -0.3 382,371 + -0.9 382,644 - GFF1069 0.26 -1.2 382,709 + GFF1069 0.33 -2.0 382,709 + GFF1069 0.33 +0.0 382,710 - GFF1069 0.33 +0.5 382,710 - GFF1069 0.33 -0.9 383,107 + GFF1069 0.76 -1.1 383,108 - GFF1069 0.76 -0.1 383,350 + +0.5 383,350 + -0.5 383,351 - -1.1 383,413 + +1.5 383,413 + -0.5 383,413 + -0.7 383,414 - +1.5 383,414 - -0.1 383,414 - -0.2 383,414 - +0.8 383,414 - +0.7 383,414 - -0.1 383,414 - +0.1 383,414 - +0.1 383,414 - -0.5 383,419 + -0.4 383,419 + -0.3 383,419 + -0.5 383,419 + -0.1 383,419 + -0.6 383,420 - -0.3 383,420 - -1.3 383,420 - +0.9 383,420 - -0.1 383,457 - GFF1070 0.22 -0.7 383,457 - GFF1070 0.22 -0.4 383,537 + GFF1070 0.52 -0.7 383,537 + GFF1070 0.52 -0.0 383,537 + GFF1070 0.52 -2.1 383,537 + GFF1070 0.52 -1.5 383,537 + GFF1070 0.52 -2.0 383,537 + GFF1070 0.52 -0.3 383,538 - GFF1070 0.52 +0.7 383,561 + GFF1070 0.61 -0.8 383,562 - GFF1070 0.61 +0.2 383,562 - GFF1070 0.61 +0.4 383,562 - GFF1070 0.61 +0.1 383,562 - GFF1070 0.61 -1.2 383,685 + -0.1 383,685 + -0.0 383,685 + -0.3 383,685 + -0.3 383,685 + -0.8 383,685 + -1.6 383,685 + -0.2 383,686 - -0.2 383,686 - +0.1 383,686 - +0.0 383,760 + GFF1071 0.12 +1.1 383,760 + GFF1071 0.12 +0.2 383,760 + GFF1071 0.12 +0.2 383,760 + GFF1071 0.12 -1.2 383,761 - GFF1071 0.12 -0.4 383,761 - GFF1071 0.12 -0.6 383,857 - GFF1071 0.45 -0.7 383,857 - GFF1071 0.45 -0.3 383,916 - GFF1071 0.65 +1.5 383,937 + GFF1071 0.72 +0.4 383,937 + GFF1071 0.72 -1.0 383,937 + GFF1071 0.72 -0.5 383,937 + GFF1071 0.72 +0.2 383,937 + GFF1071 0.72 -0.0 383,938 - GFF1071 0.72 +1.7 383,938 - GFF1071 0.72 -0.2 384,056 + -1.3 384,056 + -0.7 384,056 + -0.2 384,056 + -0.7 384,057 - -0.7 384,057 - -0.5 384,057 - -0.1 384,057 - +0.4 384,057 - +0.9 384,102 + -0.6 384,217 + GFF1072 0.67 +1.2 384,218 - GFF1072 0.67 +0.5 384,218 - GFF1072 0.67 -0.1 384,265 + +1.0 384,266 - +0.0
Or see this region's nucleotide sequence