Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1 and GFF2 are separated by 80 nucleotides
GFF1 - hypothetical protein, at 91 to 1,083
GFF1
GFF2 - Transcription accessory protein (S1 RNA-binding domain), at 1,164 to 3,539
GFF2
Position (kb) 0
1
2 Strain fitness (log2 ratio) -2
-1
0
1
2 at 0.063 kb on + strand at 0.063 kb on + strand at 0.063 kb on + strand at 0.063 kb on + strand at 0.063 kb on + strand at 0.116 kb on + strand at 0.117 kb on - strand at 0.117 kb on - strand at 0.139 kb on + strand at 0.139 kb on + strand at 0.139 kb on + strand at 0.139 kb on + strand at 0.139 kb on + strand at 0.139 kb on + strand at 0.139 kb on + strand at 0.139 kb on + strand at 0.139 kb on + strand at 0.139 kb on + strand at 0.140 kb on - strand at 0.140 kb on - strand at 0.140 kb on - strand at 0.140 kb on - strand at 0.140 kb on - strand at 0.140 kb on - strand at 0.140 kb on - strand at 0.140 kb on - strand at 0.140 kb on - strand at 0.379 kb on + strand, within GFF1 at 0.379 kb on + strand, within GFF1 at 0.379 kb on + strand, within GFF1 at 0.380 kb on - strand, within GFF1 at 0.380 kb on - strand, within GFF1 at 0.380 kb on - strand, within GFF1 at 0.380 kb on - strand, within GFF1 at 0.380 kb on - strand, within GFF1 at 0.380 kb on - strand, within GFF1 at 0.380 kb on - strand, within GFF1 at 0.380 kb on - strand, within GFF1 at 1.081 kb on + strand at 1.081 kb on + strand at 1.081 kb on + strand at 1.081 kb on + strand at 1.081 kb on + strand at 1.081 kb on + strand at 1.082 kb on - strand at 1.082 kb on - strand at 1.082 kb on - strand at 1.082 kb on - strand at 1.082 kb on - strand at 1.123 kb on + strand at 1.124 kb on - strand at 1.124 kb on - strand at 1.341 kb on + strand at 1.341 kb on + strand at 1.342 kb on - strand at 1.342 kb on - strand at 1.467 kb on + strand, within GFF2 at 1.467 kb on + strand, within GFF2 at 1.467 kb on + strand, within GFF2 at 1.467 kb on + strand, within GFF2 at 1.467 kb on + strand, within GFF2 at 1.467 kb on + strand, within GFF2 at 1.467 kb on + strand, within GFF2 at 1.467 kb on + strand, within GFF2 at 1.467 kb on + strand, within GFF2 at 1.467 kb on + strand, within GFF2 at 1.467 kb on + strand, within GFF2 at 1.467 kb on + strand, within GFF2 at 1.467 kb on + strand, within GFF2 at 1.467 kb on + strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.468 kb on - strand, within GFF2 at 1.470 kb on - strand, within GFF2 at 1.816 kb on - strand, within GFF2 at 1.816 kb on - strand, within GFF2 at 1.816 kb on - strand, within GFF2 at 1.824 kb on + strand, within GFF2 at 1.825 kb on - strand, within GFF2 at 1.825 kb on - strand, within GFF2 at 1.825 kb on - strand, within GFF2
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 63 + +0.3 63 + -0.8 63 + -0.7 63 + -0.1 63 + -0.3 116 + -1.1 117 - +0.6 117 - +2.5 139 + +0.4 139 + -0.3 139 + -0.1 139 + -0.6 139 + +0.6 139 + -0.8 139 + +0.2 139 + +0.2 139 + -0.2 139 + +1.5 140 - +0.8 140 - -0.2 140 - -0.3 140 - +0.2 140 - +0.3 140 - +0.2 140 - -0.4 140 - +0.9 140 - -1.0 379 + GFF1 0.29 +0.1 379 + GFF1 0.29 -1.7 379 + GFF1 0.29 -0.7 380 - GFF1 0.29 -0.7 380 - GFF1 0.29 -0.4 380 - GFF1 0.29 +0.6 380 - GFF1 0.29 -1.0 380 - GFF1 0.29 -0.8 380 - GFF1 0.29 -1.4 380 - GFF1 0.29 -1.0 380 - GFF1 0.29 -1.0 1,081 + -0.0 1,081 + -0.7 1,081 + -0.5 1,081 + -0.3 1,081 + -1.0 1,081 + +1.5 1,082 - +0.5 1,082 - -0.4 1,082 - +0.6 1,082 - -0.7 1,082 - +0.0 1,123 + -1.5 1,124 - -0.9 1,124 - -0.5 1,341 + -0.6 1,341 + -1.5 1,342 - +0.3 1,342 - -0.5 1,467 + GFF2 0.13 -0.9 1,467 + GFF2 0.13 +1.0 1,467 + GFF2 0.13 -0.7 1,467 + GFF2 0.13 +0.2 1,467 + GFF2 0.13 -0.2 1,467 + GFF2 0.13 -1.0 1,467 + GFF2 0.13 -0.8 1,467 + GFF2 0.13 +1.0 1,467 + GFF2 0.13 +0.1 1,467 + GFF2 0.13 -0.3 1,467 + GFF2 0.13 -0.4 1,467 + GFF2 0.13 -0.4 1,467 + GFF2 0.13 +0.0 1,467 + GFF2 0.13 -0.9 1,468 - GFF2 0.13 +0.5 1,468 - GFF2 0.13 -1.7 1,468 - GFF2 0.13 +0.2 1,468 - GFF2 0.13 +0.9 1,468 - GFF2 0.13 -0.5 1,468 - GFF2 0.13 -0.4 1,468 - GFF2 0.13 -0.5 1,468 - GFF2 0.13 -0.7 1,468 - GFF2 0.13 -0.5 1,468 - GFF2 0.13 -0.1 1,468 - GFF2 0.13 -0.4 1,468 - GFF2 0.13 -0.2 1,468 - GFF2 0.13 +0.3 1,468 - GFF2 0.13 -0.2 1,470 - GFF2 0.13 -2.0 1,816 - GFF2 0.27 +0.2 1,816 - GFF2 0.27 -0.4 1,816 - GFF2 0.27 -0.5 1,824 + GFF2 0.28 -0.3 1,825 - GFF2 0.28 -0.6 1,825 - GFF2 0.28 -0.6 1,825 - GFF2 0.28 +0.6
Or see this region's nucleotide sequence