Strain Fitness in Variovorax sp. SCN45 around GFF994

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF992 and GFF993 are separated by 4 nucleotidesGFF993 and GFF994 overlap by 8 nucleotidesGFF994 and GFF995 overlap by 4 nucleotides GFF992 - 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192), at 310,994 to 312,142 GFF992 GFF993 - Type IV pilus biogenesis protein PilF, at 312,147 to 313,001 GFF993 GFF994 - Cytoskeleton protein RodZ, at 312,994 to 313,959 GFF994 GFF995 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (flavodoxin) (EC 1.17.7.3), at 313,956 to 315,230 GFF995 Position (kb) 312 313 314Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 312.373 kb on - strand, within GFF993at 312.453 kb on + strand, within GFF993at 312.453 kb on + strand, within GFF993at 312.453 kb on + strand, within GFF993at 312.453 kb on + strand, within GFF993at 312.453 kb on + strand, within GFF993at 312.453 kb on + strand, within GFF993at 312.453 kb on + strand, within GFF993at 312.453 kb on + strand, within GFF993at 312.454 kb on - strand, within GFF993at 312.454 kb on - strand, within GFF993at 312.454 kb on - strand, within GFF993at 312.454 kb on - strand, within GFF993at 312.454 kb on - strand, within GFF993at 312.474 kb on + strand, within GFF993at 312.474 kb on + strand, within GFF993at 312.474 kb on + strand, within GFF993at 312.474 kb on + strand, within GFF993at 312.474 kb on + strand, within GFF993at 312.474 kb on + strand, within GFF993at 312.474 kb on + strand, within GFF993at 312.475 kb on - strand, within GFF993at 312.475 kb on - strand, within GFF993at 312.475 kb on - strand, within GFF993at 312.475 kb on - strand, within GFF993at 312.475 kb on - strand, within GFF993at 312.475 kb on - strand, within GFF993at 312.475 kb on - strand, within GFF993at 312.475 kb on - strand, within GFF993at 312.475 kb on - strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.564 kb on + strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.565 kb on - strand, within GFF993at 312.642 kb on + strand, within GFF993at 312.642 kb on + strand, within GFF993at 312.642 kb on + strand, within GFF993at 312.643 kb on - strand, within GFF993at 312.735 kb on + strand, within GFF993at 312.735 kb on + strand, within GFF993at 312.735 kb on + strand, within GFF993at 312.736 kb on - strand, within GFF993at 312.736 kb on - strand, within GFF993at 312.736 kb on - strand, within GFF993at 312.736 kb on - strand, within GFF993at 312.822 kb on + strand, within GFF993at 312.822 kb on + strand, within GFF993at 312.822 kb on + strand, within GFF993at 312.822 kb on + strand, within GFF993at 312.822 kb on + strand, within GFF993at 312.822 kb on + strand, within GFF993at 312.822 kb on + strand, within GFF993at 312.822 kb on + strand, within GFF993at 312.822 kb on + strand, within GFF993at 312.822 kb on + strand, within GFF993at 312.823 kb on - strand, within GFF993at 312.823 kb on - strand, within GFF993at 312.823 kb on - strand, within GFF993at 312.823 kb on - strand, within GFF993at 312.823 kb on - strand, within GFF993at 312.823 kb on - strand, within GFF993at 312.975 kb on + strandat 312.975 kb on + strandat 312.975 kb on + strandat 312.976 kb on - strandat 312.976 kb on - strandat 312.976 kb on - strandat 312.976 kb on - strandat 312.976 kb on - strandat 313.202 kb on + strand, within GFF994at 313.203 kb on - strand, within GFF994at 313.596 kb on - strand, within GFF994at 313.625 kb on + strand, within GFF994at 313.625 kb on + strand, within GFF994at 313.625 kb on + strand, within GFF994at 313.625 kb on + strand, within GFF994at 313.625 kb on + strand, within GFF994at 313.625 kb on + strand, within GFF994at 313.626 kb on - strand, within GFF994at 313.626 kb on - strand, within GFF994at 313.626 kb on - strand, within GFF994at 313.626 kb on - strand, within GFF994at 313.626 kb on - strand, within GFF994at 313.626 kb on - strand, within GFF994

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
312,373 - GFF993 0.26 +3.2
312,453 + GFF993 0.36 +4.2
312,453 + GFF993 0.36 +3.8
312,453 + GFF993 0.36 +3.2
312,453 + GFF993 0.36 +2.1
312,453 + GFF993 0.36 +3.2
312,453 + GFF993 0.36 +3.4
312,453 + GFF993 0.36 +3.8
312,453 + GFF993 0.36 +3.7
312,454 - GFF993 0.36 +3.2
312,454 - GFF993 0.36 +2.4
312,454 - GFF993 0.36 +2.8
312,454 - GFF993 0.36 +2.3
312,454 - GFF993 0.36 +3.3
312,474 + GFF993 0.38 +4.0
312,474 + GFF993 0.38 +2.8
312,474 + GFF993 0.38 +3.8
312,474 + GFF993 0.38 +3.8
312,474 + GFF993 0.38 +4.0
312,474 + GFF993 0.38 +3.0
312,474 + GFF993 0.38 +3.4
312,475 - GFF993 0.38 +2.5
312,475 - GFF993 0.38 +3.2
312,475 - GFF993 0.38 +3.3
312,475 - GFF993 0.38 +3.8
312,475 - GFF993 0.38 +3.8
312,475 - GFF993 0.38 +3.3
312,475 - GFF993 0.38 +3.4
312,475 - GFF993 0.38 +1.9
312,475 - GFF993 0.38 +3.4
312,564 + GFF993 0.49 +3.5
312,564 + GFF993 0.49 +2.3
312,564 + GFF993 0.49 +4.7
312,564 + GFF993 0.49 +4.0
312,564 + GFF993 0.49 +3.7
312,564 + GFF993 0.49 +3.6
312,564 + GFF993 0.49 +3.9
312,564 + GFF993 0.49 +4.0
312,564 + GFF993 0.49 +3.0
312,564 + GFF993 0.49 +3.9
312,564 + GFF993 0.49 +3.0
312,564 + GFF993 0.49 +3.7
312,564 + GFF993 0.49 +4.1
312,564 + GFF993 0.49 +3.4
312,564 + GFF993 0.49 +3.6
312,564 + GFF993 0.49 +4.1
312,565 - GFF993 0.49 +3.2
312,565 - GFF993 0.49 +2.8
312,565 - GFF993 0.49 +3.2
312,565 - GFF993 0.49 +1.9
312,565 - GFF993 0.49 +4.0
312,565 - GFF993 0.49 +3.2
312,565 - GFF993 0.49 +3.7
312,565 - GFF993 0.49 +3.7
312,565 - GFF993 0.49 +3.4
312,565 - GFF993 0.49 +3.4
312,565 - GFF993 0.49 +3.4
312,565 - GFF993 0.49 +3.2
312,565 - GFF993 0.49 +3.3
312,565 - GFF993 0.49 +2.2
312,565 - GFF993 0.49 +3.3
312,565 - GFF993 0.49 +3.0
312,642 + GFF993 0.58 +4.5
312,642 + GFF993 0.58 +1.9
312,642 + GFF993 0.58 +3.4
312,643 - GFF993 0.58 +2.2
312,735 + GFF993 0.69 +3.8
312,735 + GFF993 0.69 +3.4
312,735 + GFF993 0.69 +3.7
312,736 - GFF993 0.69 +3.0
312,736 - GFF993 0.69 +3.4
312,736 - GFF993 0.69 +3.4
312,736 - GFF993 0.69 +3.1
312,822 + GFF993 0.79 +4.0
312,822 + GFF993 0.79 +3.7
312,822 + GFF993 0.79 +3.8
312,822 + GFF993 0.79 +3.6
312,822 + GFF993 0.79 +3.2
312,822 + GFF993 0.79 +4.1
312,822 + GFF993 0.79 +3.8
312,822 + GFF993 0.79 +3.9
312,822 + GFF993 0.79 +4.1
312,822 + GFF993 0.79 +3.5
312,823 - GFF993 0.79 +1.9
312,823 - GFF993 0.79 +2.9
312,823 - GFF993 0.79 +3.6
312,823 - GFF993 0.79 +3.6
312,823 - GFF993 0.79 +3.4
312,823 - GFF993 0.79 +3.4
312,975 + +3.6
312,975 + +4.1
312,975 + +3.9
312,976 - +2.9
312,976 - +3.2
312,976 - +3.0
312,976 - +3.1
312,976 - +3.2
313,202 + GFF994 0.22 -1.2
313,203 - GFF994 0.22 -1.5
313,596 - GFF994 0.62 -1.7
313,625 + GFF994 0.65 -0.2
313,625 + GFF994 0.65 +0.0
313,625 + GFF994 0.65 -2.6
313,625 + GFF994 0.65 +1.4
313,625 + GFF994 0.65 +0.3
313,625 + GFF994 0.65 -1.5
313,626 - GFF994 0.65 +0.1
313,626 - GFF994 0.65 -0.9
313,626 - GFF994 0.65 -1.5
313,626 - GFF994 0.65 -1.5
313,626 - GFF994 0.65 -1.1
313,626 - GFF994 0.65 -1.6

Or see this region's nucleotide sequence