Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF855 and GFF856 are separated by 9 nucleotides GFF856 and GFF857 are separated by 22 nucleotides GFF857 and GFF858 are separated by 152 nucleotides GFF858 and GFF859 are separated by 16 nucleotides
GFF855 - Palmitoyl-CoA hydrolase( EC:3.1.2.2 ), at 162,899 to 163,588
GFF855
GFF856 - no description, at 163,598 to 164,095
GFF856
GFF857 - no description, at 164,118 to 164,975
GFF857
GFF858 - Copper tolerance protein, at 165,128 to 165,622
GFF858
GFF859 - Lactoylglutathione lyase (EC 4.4.1.5), at 165,639 to 166,031
GFF859
Position (kb) 164
165 Strain fitness (log2 ratio) -2
-1
0
1
2 at 163.254 kb on + strand, within GFF855 at 163.254 kb on + strand, within GFF855 at 163.255 kb on - strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.347 kb on + strand, within GFF855 at 163.348 kb on - strand, within GFF855 at 163.348 kb on - strand, within GFF855 at 163.540 kb on - strand at 163.560 kb on + strand at 163.599 kb on + strand at 163.600 kb on - strand at 163.728 kb on + strand, within GFF856 at 163.729 kb on - strand, within GFF856 at 163.790 kb on - strand, within GFF856 at 163.891 kb on - strand, within GFF856 at 164.212 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.218 kb on + strand, within GFF857 at 164.219 kb on - strand, within GFF857 at 164.219 kb on - strand, within GFF857 at 164.219 kb on - strand, within GFF857 at 164.222 kb on + strand, within GFF857 at 164.223 kb on - strand, within GFF857 at 164.624 kb on - strand, within GFF857 at 164.624 kb on - strand, within GFF857 at 164.717 kb on - strand, within GFF857 at 164.722 kb on + strand, within GFF857 at 165.014 kb on + strand at 165.015 kb on - strand at 165.572 kb on + strand, within GFF858 at 165.573 kb on - strand at 165.694 kb on + strand, within GFF859 at 165.922 kb on + strand, within GFF859 at 165.922 kb on + strand, within GFF859 at 165.923 kb on - strand, within GFF859 at 165.923 kb on - strand, within GFF859
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 163,254 + GFF855 0.51 -0.6 163,254 + GFF855 0.51 +0.1 163,255 - GFF855 0.52 -0.3 163,347 + GFF855 0.65 -1.5 163,347 + GFF855 0.65 +1.2 163,347 + GFF855 0.65 +0.1 163,347 + GFF855 0.65 +0.2 163,347 + GFF855 0.65 -0.3 163,348 - GFF855 0.65 -1.6 163,348 - GFF855 0.65 +0.6 163,540 - +0.2 163,560 + +0.2 163,599 + -0.4 163,600 - -1.2 163,728 + GFF856 0.26 -0.2 163,729 - GFF856 0.26 -0.3 163,790 - GFF856 0.39 +0.2 163,891 - GFF856 0.59 -0.4 164,212 + GFF857 0.11 +0.1 164,218 + GFF857 0.12 -1.5 164,218 + GFF857 0.12 -0.2 164,218 + GFF857 0.12 +0.4 164,218 + GFF857 0.12 +0.2 164,218 + GFF857 0.12 -0.6 164,218 + GFF857 0.12 +0.0 164,218 + GFF857 0.12 +0.2 164,219 - GFF857 0.12 +1.1 164,219 - GFF857 0.12 -0.5 164,219 - GFF857 0.12 +0.6 164,222 + GFF857 0.12 +2.2 164,223 - GFF857 0.12 -0.2 164,624 - GFF857 0.59 -0.2 164,624 - GFF857 0.59 -0.5 164,717 - GFF857 0.70 +0.4 164,722 + GFF857 0.70 -0.1 165,014 + +0.7 165,015 - +0.8 165,572 + GFF858 0.90 +1.2 165,573 - +0.2 165,694 + GFF859 0.14 +0.2 165,922 + GFF859 0.72 -1.0 165,922 + GFF859 0.72 -1.9 165,923 - GFF859 0.72 +1.8 165,923 - GFF859 0.72 -1.0
Or see this region's nucleotide sequence