Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF787 and GFF788 are separated by 21 nucleotides GFF788 and GFF789 are separated by 1 nucleotides GFF789 and GFF790 are separated by 179 nucleotides GFF790 and GFF791 are separated by 7 nucleotides
GFF787 - hypothetical protein, at 80,455 to 81,186
GFF787
GFF788 - hypothetical protein, at 81,208 to 81,681
GFF788
GFF789 - protease Do, at 81,683 to 83,071
GFF789
GFF790 - hypothetical protein, at 83,251 to 83,922
GFF790
GFF791 - RNA polymerase sigma factor RpoE, at 83,930 to 84,466
GFF791
Position (kb) 81
82
83
84 Strain fitness (log2 ratio) -2
-1
0
1
2 at 80.728 kb on + strand, within GFF787 at 80.728 kb on + strand, within GFF787 at 80.729 kb on - strand, within GFF787 at 80.729 kb on - strand, within GFF787 at 80.797 kb on + strand, within GFF787 at 80.797 kb on + strand, within GFF787 at 80.798 kb on - strand, within GFF787 at 80.798 kb on - strand, within GFF787 at 80.798 kb on - strand, within GFF787 at 81.195 kb on + strand at 81.222 kb on + strand at 81.231 kb on + strand at 81.231 kb on + strand at 81.231 kb on + strand at 81.361 kb on + strand, within GFF788 at 81.361 kb on + strand, within GFF788 at 81.362 kb on - strand, within GFF788 at 81.419 kb on + strand, within GFF788 at 81.810 kb on - strand at 82.185 kb on - strand, within GFF789 at 82.199 kb on + strand, within GFF789 at 82.253 kb on + strand, within GFF789 at 82.253 kb on + strand, within GFF789 at 82.253 kb on + strand, within GFF789 at 82.253 kb on + strand, within GFF789 at 82.253 kb on + strand, within GFF789 at 82.253 kb on + strand, within GFF789 at 82.253 kb on + strand, within GFF789 at 82.254 kb on - strand, within GFF789 at 82.254 kb on - strand, within GFF789 at 82.254 kb on - strand, within GFF789 at 82.254 kb on - strand, within GFF789 at 82.254 kb on - strand, within GFF789 at 82.254 kb on - strand, within GFF789 at 82.355 kb on + strand, within GFF789 at 82.355 kb on + strand, within GFF789 at 82.355 kb on + strand, within GFF789 at 82.355 kb on + strand, within GFF789 at 82.355 kb on + strand, within GFF789 at 82.356 kb on - strand, within GFF789 at 82.356 kb on - strand, within GFF789 at 82.356 kb on - strand, within GFF789 at 82.374 kb on - strand, within GFF789 at 82.545 kb on - strand, within GFF789 at 82.545 kb on - strand, within GFF789 at 82.545 kb on - strand, within GFF789 at 82.545 kb on - strand, within GFF789 at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.136 kb on + strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.137 kb on - strand at 83.174 kb on - strand at 83.365 kb on + strand, within GFF790 at 83.365 kb on + strand, within GFF790 at 83.503 kb on + strand, within GFF790 at 83.503 kb on + strand, within GFF790 at 83.503 kb on + strand, within GFF790 at 83.504 kb on - strand, within GFF790 at 83.504 kb on - strand, within GFF790 at 83.632 kb on + strand, within GFF790 at 83.633 kb on - strand, within GFF790 at 83.633 kb on - strand, within GFF790 at 83.726 kb on + strand, within GFF790 at 83.726 kb on + strand, within GFF790 at 83.727 kb on - strand, within GFF790 at 83.727 kb on - strand, within GFF790 at 83.727 kb on - strand, within GFF790 at 83.978 kb on + strand at 83.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 80,728 + GFF787 0.37 +0.2 80,728 + GFF787 0.37 +0.5 80,729 - GFF787 0.37 +0.1 80,729 - GFF787 0.37 -0.3 80,797 + GFF787 0.47 +1.0 80,797 + GFF787 0.47 +0.2 80,798 - GFF787 0.47 +1.0 80,798 - GFF787 0.47 +1.1 80,798 - GFF787 0.47 +0.1 81,195 + -0.3 81,222 + +0.2 81,231 + +0.8 81,231 + +1.8 81,231 + -0.7 81,361 + GFF788 0.32 -1.0 81,361 + GFF788 0.32 +1.2 81,362 - GFF788 0.32 -0.4 81,419 + GFF788 0.45 +0.7 81,810 - -0.0 82,185 - GFF789 0.36 -1.3 82,199 + GFF789 0.37 -0.7 82,253 + GFF789 0.41 +0.2 82,253 + GFF789 0.41 -1.0 82,253 + GFF789 0.41 -0.4 82,253 + GFF789 0.41 -0.2 82,253 + GFF789 0.41 -2.3 82,253 + GFF789 0.41 -0.9 82,253 + GFF789 0.41 -1.7 82,254 - GFF789 0.41 +0.5 82,254 - GFF789 0.41 -0.6 82,254 - GFF789 0.41 -0.1 82,254 - GFF789 0.41 -0.4 82,254 - GFF789 0.41 +0.2 82,254 - GFF789 0.41 -0.1 82,355 + GFF789 0.48 -0.8 82,355 + GFF789 0.48 +0.0 82,355 + GFF789 0.48 +0.7 82,355 + GFF789 0.48 +0.0 82,355 + GFF789 0.48 -0.4 82,356 - GFF789 0.48 -1.3 82,356 - GFF789 0.48 -0.0 82,356 - GFF789 0.48 -0.5 82,374 - GFF789 0.50 -0.2 82,545 - GFF789 0.62 -0.4 82,545 - GFF789 0.62 +0.2 82,545 - GFF789 0.62 -1.3 82,545 - GFF789 0.62 -0.2 83,136 + +0.4 83,136 + +0.2 83,136 + +1.2 83,136 + -0.4 83,136 + +0.0 83,136 + -0.4 83,136 + +0.5 83,136 + -0.9 83,137 - +1.1 83,137 - +0.2 83,137 - -0.5 83,137 - +0.0 83,137 - -0.2 83,137 - -0.1 83,137 - -0.0 83,137 - -0.0 83,174 - -0.6 83,365 + GFF790 0.17 +1.0 83,365 + GFF790 0.17 -0.3 83,503 + GFF790 0.38 -0.8 83,503 + GFF790 0.38 +0.4 83,503 + GFF790 0.38 -1.0 83,504 - GFF790 0.38 -1.3 83,504 - GFF790 0.38 +1.1 83,632 + GFF790 0.57 +0.4 83,633 - GFF790 0.57 -1.0 83,633 - GFF790 0.57 +0.0 83,726 + GFF790 0.71 -0.5 83,726 + GFF790 0.71 +0.2 83,727 - GFF790 0.71 -1.2 83,727 - GFF790 0.71 +0.6 83,727 - GFF790 0.71 -0.0 83,978 + +0.8 83,979 - -1.2
Or see this region's nucleotide sequence