Strain Fitness in Variovorax sp. SCN45 around GFF778

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF777 and GFF778 are separated by 82 nucleotidesGFF778 and GFF779 are separated by 26 nucleotides GFF777 - no description, at 58,774 to 59,028 GFF777 GFF778 - Channel-forming transporter/cytolysins activator of TpsB family, at 59,111 to 60,865 GFF778 GFF779 - hypothetical protein, at 60,892 to 62,088 GFF779 Position (kb) 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 58.471 kb on + strandat 58.614 kb on + strandat 58.669 kb on + strandat 58.669 kb on + strandat 58.670 kb on - strandat 58.773 kb on + strandat 58.773 kb on + strandat 58.773 kb on + strandat 58.774 kb on - strandat 58.774 kb on - strandat 58.774 kb on - strandat 58.774 kb on - strandat 58.774 kb on - strandat 58.774 kb on - strandat 58.780 kb on + strandat 58.780 kb on + strandat 58.781 kb on - strandat 58.781 kb on - strandat 58.781 kb on - strandat 58.781 kb on - strandat 58.858 kb on + strand, within GFF777at 58.859 kb on - strand, within GFF777at 58.859 kb on - strand, within GFF777at 58.859 kb on - strand, within GFF777at 58.885 kb on + strand, within GFF777at 58.885 kb on + strand, within GFF777at 58.885 kb on + strand, within GFF777at 58.886 kb on - strand, within GFF777at 58.886 kb on - strand, within GFF777at 58.886 kb on - strand, within GFF777at 58.894 kb on + strand, within GFF777at 58.894 kb on + strand, within GFF777at 58.894 kb on + strand, within GFF777at 58.894 kb on + strand, within GFF777at 58.894 kb on + strand, within GFF777at 58.895 kb on - strand, within GFF777at 58.895 kb on - strand, within GFF777at 58.895 kb on - strand, within GFF777at 58.895 kb on - strand, within GFF777at 58.969 kb on + strand, within GFF777at 58.969 kb on + strand, within GFF777at 58.969 kb on + strand, within GFF777at 58.969 kb on + strand, within GFF777at 58.970 kb on - strand, within GFF777at 59.096 kb on + strandat 59.096 kb on + strandat 59.096 kb on + strandat 59.097 kb on - strandat 59.151 kb on + strandat 59.169 kb on + strandat 59.169 kb on + strandat 59.169 kb on + strandat 59.170 kb on - strandat 59.170 kb on - strandat 59.206 kb on + strandat 59.206 kb on + strandat 59.206 kb on + strandat 59.223 kb on + strandat 59.270 kb on + strandat 59.270 kb on + strandat 59.271 kb on - strandat 59.279 kb on - strandat 59.523 kb on - strand, within GFF778at 59.825 kb on + strand, within GFF778at 59.825 kb on + strand, within GFF778at 59.825 kb on + strand, within GFF778at 59.826 kb on - strand, within GFF778at 59.826 kb on - strand, within GFF778at 59.826 kb on - strand, within GFF778at 59.826 kb on - strand, within GFF778at 59.848 kb on + strand, within GFF778at 59.848 kb on + strand, within GFF778at 59.848 kb on + strand, within GFF778at 59.849 kb on - strand, within GFF778at 59.849 kb on - strand, within GFF778at 59.952 kb on - strand, within GFF778at 60.029 kb on + strand, within GFF778at 60.029 kb on + strand, within GFF778at 60.030 kb on - strand, within GFF778at 60.030 kb on - strand, within GFF778at 60.042 kb on - strand, within GFF778at 60.048 kb on - strand, within GFF778at 60.116 kb on + strand, within GFF778at 60.116 kb on + strand, within GFF778at 60.116 kb on + strand, within GFF778at 60.116 kb on + strand, within GFF778at 60.116 kb on + strand, within GFF778at 60.116 kb on + strand, within GFF778at 60.116 kb on + strand, within GFF778at 60.117 kb on - strand, within GFF778at 60.117 kb on - strand, within GFF778at 60.117 kb on - strand, within GFF778at 60.117 kb on - strand, within GFF778at 60.117 kb on - strand, within GFF778at 60.123 kb on - strand, within GFF778at 60.198 kb on + strand, within GFF778at 60.198 kb on + strand, within GFF778at 60.229 kb on + strand, within GFF778at 60.229 kb on + strand, within GFF778at 60.230 kb on - strand, within GFF778at 60.230 kb on - strand, within GFF778at 60.230 kb on - strand, within GFF778at 60.230 kb on - strand, within GFF778at 60.345 kb on - strand, within GFF778at 60.345 kb on - strand, within GFF778at 60.345 kb on - strand, within GFF778at 60.407 kb on - strand, within GFF778at 60.407 kb on - strand, within GFF778at 60.425 kb on + strand, within GFF778at 60.425 kb on + strand, within GFF778at 60.426 kb on - strand, within GFF778at 60.426 kb on - strand, within GFF778at 60.426 kb on - strand, within GFF778at 60.426 kb on - strand, within GFF778at 60.427 kb on + strand, within GFF778at 60.557 kb on + strand, within GFF778at 60.558 kb on - strand, within GFF778at 60.663 kb on - strand, within GFF778at 60.677 kb on + strand, within GFF778at 60.678 kb on - strand, within GFF778at 60.773 kb on + strandat 60.773 kb on + strandat 60.774 kb on - strandat 60.774 kb on - strandat 61.210 kb on + strand, within GFF779at 61.210 kb on + strand, within GFF779at 61.210 kb on + strand, within GFF779at 61.210 kb on + strand, within GFF779at 61.210 kb on + strand, within GFF779at 61.210 kb on + strand, within GFF779at 61.211 kb on - strand, within GFF779at 61.211 kb on - strand, within GFF779at 61.211 kb on - strand, within GFF779at 61.211 kb on - strand, within GFF779at 61.342 kb on + strand, within GFF779at 61.342 kb on + strand, within GFF779at 61.342 kb on + strand, within GFF779at 61.343 kb on - strand, within GFF779at 61.343 kb on - strand, within GFF779at 61.428 kb on + strand, within GFF779at 61.429 kb on - strand, within GFF779at 61.429 kb on - strand, within GFF779at 61.459 kb on + strand, within GFF779at 61.510 kb on + strand, within GFF779at 61.510 kb on + strand, within GFF779at 61.511 kb on - strand, within GFF779at 61.530 kb on + strand, within GFF779at 61.530 kb on + strand, within GFF779at 61.531 kb on - strand, within GFF779at 61.544 kb on - strand, within GFF779at 61.550 kb on + strand, within GFF779at 61.551 kb on - strand, within GFF779at 61.551 kb on - strand, within GFF779at 61.645 kb on + strand, within GFF779at 61.744 kb on + strand, within GFF779at 61.744 kb on + strand, within GFF779at 61.763 kb on - strand, within GFF779

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
58,471 + -1.9
58,614 + +0.8
58,669 + +0.2
58,669 + -0.1
58,670 - +0.2
58,773 + -0.3
58,773 + -0.5
58,773 + +0.8
58,774 - +0.0
58,774 - -0.2
58,774 - -0.2
58,774 - -0.0
58,774 - +0.9
58,774 - -0.8
58,780 + -0.3
58,780 + -0.1
58,781 - -0.4
58,781 - +0.5
58,781 - +1.5
58,781 - -0.1
58,858 + GFF777 0.33 +0.5
58,859 - GFF777 0.33 -0.8
58,859 - GFF777 0.33 +0.1
58,859 - GFF777 0.33 +0.1
58,885 + GFF777 0.44 +0.8
58,885 + GFF777 0.44 -0.1
58,885 + GFF777 0.44 -0.7
58,886 - GFF777 0.44 -0.1
58,886 - GFF777 0.44 +0.1
58,886 - GFF777 0.44 +0.2
58,894 + GFF777 0.47 +1.2
58,894 + GFF777 0.47 -0.2
58,894 + GFF777 0.47 -0.9
58,894 + GFF777 0.47 +0.8
58,894 + GFF777 0.47 +1.0
58,895 - GFF777 0.47 +2.2
58,895 - GFF777 0.47 -0.1
58,895 - GFF777 0.47 -0.1
58,895 - GFF777 0.47 +1.6
58,969 + GFF777 0.76 -1.3
58,969 + GFF777 0.76 +0.8
58,969 + GFF777 0.76 +0.1
58,969 + GFF777 0.76 -1.6
58,970 - GFF777 0.77 +0.4
59,096 + +0.1
59,096 + +0.1
59,096 + +2.6
59,097 - -0.2
59,151 + -0.2
59,169 + -0.4
59,169 + -0.6
59,169 + +0.5
59,170 - +0.6
59,170 - -0.8
59,206 + -0.4
59,206 + -0.1
59,206 + +0.2
59,223 + +0.5
59,270 + +4.1
59,270 + -0.4
59,271 - -0.1
59,279 - +0.7
59,523 - GFF778 0.23 -0.4
59,825 + GFF778 0.41 +1.4
59,825 + GFF778 0.41 +0.8
59,825 + GFF778 0.41 +0.5
59,826 - GFF778 0.41 +0.2
59,826 - GFF778 0.41 -0.1
59,826 - GFF778 0.41 +0.0
59,826 - GFF778 0.41 -1.2
59,848 + GFF778 0.42 -0.1
59,848 + GFF778 0.42 -0.5
59,848 + GFF778 0.42 +0.4
59,849 - GFF778 0.42 +0.2
59,849 - GFF778 0.42 -2.8
59,952 - GFF778 0.48 -1.5
60,029 + GFF778 0.52 +0.8
60,029 + GFF778 0.52 +0.2
60,030 - GFF778 0.52 +0.6
60,030 - GFF778 0.52 +0.2
60,042 - GFF778 0.53 -0.9
60,048 - GFF778 0.53 -0.7
60,116 + GFF778 0.57 +3.7
60,116 + GFF778 0.57 -0.9
60,116 + GFF778 0.57 -0.1
60,116 + GFF778 0.57 -1.2
60,116 + GFF778 0.57 -0.2
60,116 + GFF778 0.57 +1.8
60,116 + GFF778 0.57 +0.7
60,117 - GFF778 0.57 +0.2
60,117 - GFF778 0.57 -0.8
60,117 - GFF778 0.57 +0.2
60,117 - GFF778 0.57 +0.4
60,117 - GFF778 0.57 -0.0
60,123 - GFF778 0.58 +0.8
60,198 + GFF778 0.62 -0.3
60,198 + GFF778 0.62 +0.1
60,229 + GFF778 0.64 +0.4
60,229 + GFF778 0.64 +1.5
60,230 - GFF778 0.64 -0.3
60,230 - GFF778 0.64 +0.2
60,230 - GFF778 0.64 -0.8
60,230 - GFF778 0.64 -0.7
60,345 - GFF778 0.70 -0.3
60,345 - GFF778 0.70 +1.2
60,345 - GFF778 0.70 -0.7
60,407 - GFF778 0.74 -0.1
60,407 - GFF778 0.74 -1.2
60,425 + GFF778 0.75 -1.5
60,425 + GFF778 0.75 -0.4
60,426 - GFF778 0.75 -0.3
60,426 - GFF778 0.75 -0.6
60,426 - GFF778 0.75 -1.2
60,426 - GFF778 0.75 -0.1
60,427 + GFF778 0.75 -0.6
60,557 + GFF778 0.82 -0.7
60,558 - GFF778 0.82 -0.5
60,663 - GFF778 0.88 -0.9
60,677 + GFF778 0.89 -0.6
60,678 - GFF778 0.89 +0.3
60,773 + +0.2
60,773 + +0.5
60,774 - -1.2
60,774 - +0.0
61,210 + GFF779 0.27 +0.6
61,210 + GFF779 0.27 +0.2
61,210 + GFF779 0.27 +0.3
61,210 + GFF779 0.27 -0.6
61,210 + GFF779 0.27 +0.1
61,210 + GFF779 0.27 +0.7
61,211 - GFF779 0.27 +0.8
61,211 - GFF779 0.27 -0.8
61,211 - GFF779 0.27 -0.1
61,211 - GFF779 0.27 -0.5
61,342 + GFF779 0.38 +0.5
61,342 + GFF779 0.38 +0.8
61,342 + GFF779 0.38 -0.6
61,343 - GFF779 0.38 -0.0
61,343 - GFF779 0.38 +0.2
61,428 + GFF779 0.45 -0.5
61,429 - GFF779 0.45 +0.8
61,429 - GFF779 0.45 +1.2
61,459 + GFF779 0.47 -1.0
61,510 + GFF779 0.52 +1.6
61,510 + GFF779 0.52 -0.1
61,511 - GFF779 0.52 +0.3
61,530 + GFF779 0.53 +0.9
61,530 + GFF779 0.53 +0.7
61,531 - GFF779 0.53 -0.5
61,544 - GFF779 0.54 -1.0
61,550 + GFF779 0.55 +0.4
61,551 - GFF779 0.55 +1.0
61,551 - GFF779 0.55 -1.5
61,645 + GFF779 0.63 +1.0
61,744 + GFF779 0.71 -0.3
61,744 + GFF779 0.71 -0.8
61,763 - GFF779 0.73 +0.0

Or see this region's nucleotide sequence