Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7317 and GFF7318 overlap by 4 nucleotides GFF7318 and GFF7319 are separated by 184 nucleotides GFF7319 and GFF7320 are separated by 85 nucleotides
GFF7317 - RND efflux system, inner membrane transporter, at 9,642 to 12,794
GFF7317
GFF7318 - RND efflux system, membrane fusion protein, at 12,791 to 14,047
GFF7318
GFF7319 - hypothetical protein, at 14,232 to 14,690
GFF7319
GFF7320 - tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3), at 14,776 to 16,122
GFF7320
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.262 kb on + strand, within GFF7317 at 12.262 kb on + strand, within GFF7317 at 12.262 kb on + strand, within GFF7317 at 12.263 kb on - strand, within GFF7317 at 12.409 kb on + strand, within GFF7317 at 12.410 kb on - strand, within GFF7317 at 12.676 kb on + strand at 12.676 kb on + strand at 12.676 kb on + strand at 12.676 kb on + strand at 12.676 kb on + strand at 12.676 kb on + strand at 12.676 kb on + strand at 12.677 kb on - strand at 12.677 kb on - strand at 12.677 kb on - strand at 12.677 kb on - strand at 12.677 kb on - strand at 12.709 kb on + strand at 12.709 kb on + strand at 12.710 kb on - strand at 12.710 kb on - strand at 12.710 kb on - strand at 12.710 kb on - strand at 12.710 kb on - strand at 13.004 kb on + strand, within GFF7318 at 13.004 kb on + strand, within GFF7318 at 13.004 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.141 kb on + strand, within GFF7318 at 13.141 kb on + strand, within GFF7318 at 13.141 kb on + strand, within GFF7318 at 13.141 kb on + strand, within GFF7318 at 13.141 kb on + strand, within GFF7318 at 13.440 kb on + strand, within GFF7318 at 13.440 kb on + strand, within GFF7318 at 13.441 kb on - strand, within GFF7318 at 13.441 kb on - strand, within GFF7318 at 13.441 kb on - strand, within GFF7318 at 13.491 kb on + strand, within GFF7318 at 13.491 kb on + strand, within GFF7318 at 13.492 kb on - strand, within GFF7318 at 13.632 kb on + strand, within GFF7318 at 13.632 kb on + strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 14.004 kb on - strand at 14.080 kb on + strand at 14.081 kb on - strand at 14.130 kb on + strand at 14.130 kb on + strand at 14.130 kb on + strand at 14.130 kb on + strand at 14.131 kb on - strand at 14.198 kb on - strand at 14.225 kb on - strand at 14.264 kb on + strand at 14.265 kb on - strand at 14.538 kb on + strand, within GFF7319 at 14.538 kb on + strand, within GFF7319 at 14.538 kb on + strand, within GFF7319 at 14.538 kb on + strand, within GFF7319 at 14.538 kb on + strand, within GFF7319 at 14.538 kb on + strand, within GFF7319 at 14.539 kb on - strand, within GFF7319 at 14.539 kb on - strand, within GFF7319 at 14.539 kb on - strand, within GFF7319 at 14.550 kb on + strand, within GFF7319 at 14.550 kb on + strand, within GFF7319 at 14.550 kb on + strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.688 kb on + strand at 14.688 kb on + strand at 14.688 kb on + strand at 14.688 kb on + strand at 14.688 kb on + strand at 14.688 kb on + strand at 14.688 kb on + strand at 14.689 kb on - strand at 14.689 kb on - strand at 14.786 kb on + strand at 14.786 kb on + strand at 14.787 kb on - strand at 14.787 kb on - strand at 14.787 kb on - strand at 14.787 kb on - strand at 14.821 kb on + strand at 14.821 kb on + strand at 14.866 kb on + strand at 14.866 kb on + strand at 14.866 kb on + strand at 14.866 kb on + strand at 14.867 kb on - strand at 14.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 12,262 + GFF7317 0.83 -1.5 12,262 + GFF7317 0.83 -1.7 12,262 + GFF7317 0.83 +0.6 12,263 - GFF7317 0.83 -0.3 12,409 + GFF7317 0.88 -0.2 12,410 - GFF7317 0.88 +0.5 12,676 + +0.1 12,676 + -0.5 12,676 + -2.0 12,676 + +0.4 12,676 + +0.0 12,676 + -0.2 12,676 + -0.6 12,677 - -0.3 12,677 - -0.2 12,677 - +1.4 12,677 - +0.6 12,677 - -0.3 12,709 + +0.1 12,709 + -0.8 12,710 - +0.5 12,710 - -0.4 12,710 - -0.4 12,710 - +1.4 12,710 - +0.4 13,004 + GFF7318 0.17 -0.9 13,004 + GFF7318 0.17 -0.3 13,004 + GFF7318 0.17 +0.8 13,074 + GFF7318 0.23 +0.1 13,074 + GFF7318 0.23 -1.2 13,074 + GFF7318 0.23 +0.3 13,074 + GFF7318 0.23 -0.0 13,074 + GFF7318 0.23 -0.7 13,074 + GFF7318 0.23 -0.5 13,074 + GFF7318 0.23 -0.5 13,074 + GFF7318 0.23 -0.7 13,074 + GFF7318 0.23 -2.3 13,074 + GFF7318 0.23 -1.0 13,075 - GFF7318 0.23 -0.0 13,075 - GFF7318 0.23 -0.3 13,075 - GFF7318 0.23 +0.5 13,075 - GFF7318 0.23 +0.3 13,075 - GFF7318 0.23 +0.0 13,075 - GFF7318 0.23 -0.0 13,075 - GFF7318 0.23 +0.1 13,075 - GFF7318 0.23 -0.7 13,075 - GFF7318 0.23 -0.8 13,075 - GFF7318 0.23 -0.2 13,141 + GFF7318 0.28 +0.3 13,141 + GFF7318 0.28 -0.2 13,141 + GFF7318 0.28 -1.0 13,141 + GFF7318 0.28 +0.3 13,141 + GFF7318 0.28 +0.8 13,440 + GFF7318 0.52 +0.2 13,440 + GFF7318 0.52 -0.3 13,441 - GFF7318 0.52 +1.0 13,441 - GFF7318 0.52 -1.3 13,441 - GFF7318 0.52 -0.2 13,491 + GFF7318 0.56 +0.4 13,491 + GFF7318 0.56 -0.2 13,492 - GFF7318 0.56 +0.5 13,632 + GFF7318 0.67 -0.0 13,632 + GFF7318 0.67 -0.2 13,633 - GFF7318 0.67 -0.1 13,633 - GFF7318 0.67 -0.5 13,633 - GFF7318 0.67 -0.7 13,633 - GFF7318 0.67 -0.5 13,633 - GFF7318 0.67 -0.2 13,633 - GFF7318 0.67 +0.5 13,633 - GFF7318 0.67 -0.3 13,633 - GFF7318 0.67 -0.3 13,633 - GFF7318 0.67 -0.7 13,633 - GFF7318 0.67 +0.1 14,004 - -0.1 14,080 + +0.5 14,081 - +0.1 14,130 + -0.4 14,130 + -1.3 14,130 + -0.6 14,130 + -0.5 14,131 - +0.1 14,198 - -0.5 14,225 - +0.7 14,264 + -0.5 14,265 - +1.3 14,538 + GFF7319 0.67 +0.6 14,538 + GFF7319 0.67 +0.2 14,538 + GFF7319 0.67 -0.2 14,538 + GFF7319 0.67 -0.7 14,538 + GFF7319 0.67 +0.2 14,538 + GFF7319 0.67 -0.7 14,539 - GFF7319 0.67 +0.2 14,539 - GFF7319 0.67 +0.5 14,539 - GFF7319 0.67 +0.1 14,550 + GFF7319 0.69 -0.3 14,550 + GFF7319 0.69 +0.1 14,550 + GFF7319 0.69 -0.1 14,551 - GFF7319 0.69 -0.3 14,551 - GFF7319 0.69 -0.8 14,551 - GFF7319 0.69 -0.3 14,551 - GFF7319 0.69 -0.2 14,551 - GFF7319 0.69 -0.1 14,551 - GFF7319 0.69 +0.3 14,551 - GFF7319 0.69 +0.1 14,688 + -0.5 14,688 + +0.5 14,688 + -0.1 14,688 + -0.7 14,688 + +2.7 14,688 + -0.1 14,688 + +0.6 14,689 - +0.5 14,689 - +0.4 14,786 + -0.1 14,786 + +0.1 14,787 - +0.2 14,787 - -0.0 14,787 - -0.4 14,787 - -0.3 14,821 + -2.0 14,821 + -0.4 14,866 + +1.0 14,866 + +0.5 14,866 + -1.1 14,866 + -0.2 14,867 - -1.0 14,867 - -1.0
Or see this region's nucleotide sequence