Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7279 and GFF7280 are separated by 885 nucleotides GFF7280 and GFF7281 are separated by 66 nucleotides
GFF7279 - no description, at 28,488 to 28,781
GFF7279
GFF7280 - no description, at 29,667 to 29,849
GFF7280
GFF7281 - no description, at 29,916 to 30,563
GFF7281
Position (kb) 29
30 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 28.690 kb on - strand, within GFF7279 at 28.723 kb on + strand, within GFF7279 at 28.806 kb on - strand at 28.845 kb on - strand at 28.845 kb on - strand at 28.984 kb on + strand at 28.984 kb on + strand at 29.143 kb on + strand at 29.144 kb on - strand at 29.144 kb on - strand at 29.147 kb on + strand at 29.208 kb on + strand at 29.209 kb on - strand at 29.209 kb on - strand at 29.217 kb on + strand at 29.218 kb on - strand at 29.221 kb on + strand at 29.260 kb on - strand at 29.260 kb on - strand at 29.261 kb on + strand at 29.262 kb on - strand at 29.263 kb on + strand at 29.263 kb on + strand at 29.263 kb on + strand at 29.263 kb on + strand at 29.263 kb on + strand at 29.263 kb on + strand at 29.264 kb on - strand at 29.357 kb on - strand at 29.398 kb on + strand at 29.399 kb on - strand at 29.481 kb on + strand at 29.481 kb on + strand at 29.481 kb on + strand at 29.481 kb on + strand at 29.482 kb on - strand at 29.482 kb on - strand at 29.483 kb on + strand at 29.483 kb on + strand at 29.483 kb on + strand at 29.484 kb on - strand at 29.505 kb on + strand at 29.505 kb on + strand at 29.505 kb on + strand at 29.505 kb on + strand at 29.505 kb on + strand at 29.505 kb on + strand at 29.505 kb on + strand at 29.505 kb on + strand at 29.505 kb on + strand at 29.505 kb on + strand at 29.505 kb on + strand at 29.506 kb on - strand at 29.553 kb on - strand at 29.590 kb on + strand at 29.590 kb on + strand at 29.590 kb on + strand at 29.590 kb on + strand at 29.590 kb on + strand at 29.591 kb on - strand at 29.698 kb on + strand, within GFF7280 at 29.698 kb on + strand, within GFF7280 at 29.699 kb on - strand, within GFF7280 at 29.783 kb on + strand, within GFF7280 at 29.783 kb on + strand, within GFF7280 at 29.784 kb on - strand, within GFF7280 at 29.784 kb on - strand, within GFF7280 at 29.784 kb on - strand, within GFF7280 at 29.784 kb on - strand, within GFF7280 at 29.913 kb on + strand at 29.913 kb on + strand at 29.913 kb on + strand at 29.914 kb on - strand at 29.914 kb on - strand at 29.914 kb on - strand at 29.956 kb on + strand at 30.025 kb on - strand, within GFF7281 at 30.043 kb on + strand, within GFF7281 at 30.044 kb on - strand, within GFF7281 at 30.044 kb on - strand, within GFF7281 at 30.049 kb on + strand, within GFF7281 at 30.049 kb on + strand, within GFF7281 at 30.049 kb on + strand, within GFF7281 at 30.049 kb on + strand, within GFF7281 at 30.050 kb on - strand, within GFF7281 at 30.050 kb on - strand, within GFF7281 at 30.050 kb on - strand, within GFF7281 at 30.050 kb on - strand, within GFF7281 at 30.050 kb on - strand, within GFF7281 at 30.050 kb on - strand, within GFF7281 at 30.050 kb on - strand, within GFF7281 at 30.050 kb on - strand, within GFF7281 at 30.050 kb on - strand, within GFF7281 at 30.050 kb on - strand, within GFF7281 at 30.050 kb on - strand, within GFF7281 at 30.098 kb on + strand, within GFF7281 at 30.099 kb on - strand, within GFF7281 at 30.099 kb on - strand, within GFF7281 at 30.138 kb on - strand, within GFF7281 at 30.254 kb on - strand, within GFF7281 at 30.289 kb on - strand, within GFF7281 at 30.402 kb on + strand, within GFF7281 at 30.403 kb on - strand, within GFF7281 at 30.450 kb on + strand, within GFF7281 at 30.450 kb on + strand, within GFF7281 at 30.450 kb on + strand, within GFF7281 at 30.450 kb on + strand, within GFF7281 at 30.451 kb on - strand, within GFF7281 at 30.451 kb on - strand, within GFF7281 at 30.451 kb on - strand, within GFF7281 at 30.483 kb on + strand, within GFF7281 at 30.484 kb on - strand, within GFF7281 at 30.576 kb on - strand at 30.576 kb on - strand at 30.576 kb on - strand at 30.584 kb on - strand at 30.634 kb on + strand at 30.634 kb on + strand at 30.635 kb on - strand at 30.649 kb on - strand at 30.665 kb on - strand at 30.665 kb on - strand at 30.665 kb on - strand at 30.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 28,690 - GFF7279 0.69 -0.3 28,723 + GFF7279 0.80 -0.1 28,806 - -0.8 28,845 - +0.1 28,845 - +0.1 28,984 + -0.8 28,984 + -0.2 29,143 + +0.7 29,144 - -0.1 29,144 - +0.5 29,147 + +2.3 29,208 + -0.2 29,209 - +0.3 29,209 - -0.4 29,217 + -0.2 29,218 - -0.7 29,221 + -1.1 29,260 - +0.1 29,260 - -1.5 29,261 + +1.3 29,262 - +0.6 29,263 + -0.6 29,263 + -0.0 29,263 + -0.5 29,263 + -0.7 29,263 + -2.4 29,263 + -0.6 29,264 - -0.9 29,357 - +0.3 29,398 + +0.9 29,399 - -1.3 29,481 + +0.4 29,481 + -0.0 29,481 + -0.4 29,481 + +0.4 29,482 - +0.1 29,482 - -0.5 29,483 + +0.4 29,483 + -1.2 29,483 + -0.6 29,484 - +0.3 29,505 + -0.3 29,505 + -0.6 29,505 + -1.3 29,505 + -0.5 29,505 + +0.2 29,505 + +0.8 29,505 + -0.4 29,505 + +1.1 29,505 + -0.4 29,505 + -0.9 29,505 + +0.2 29,506 - -1.6 29,553 - +0.7 29,590 + +0.1 29,590 + +0.3 29,590 + -0.8 29,590 + +0.4 29,590 + -0.2 29,591 - -0.4 29,698 + GFF7280 0.17 +0.2 29,698 + GFF7280 0.17 +0.4 29,699 - GFF7280 0.17 -0.6 29,783 + GFF7280 0.63 +0.2 29,783 + GFF7280 0.63 +0.0 29,784 - GFF7280 0.64 -0.7 29,784 - GFF7280 0.64 +0.3 29,784 - GFF7280 0.64 -0.0 29,784 - GFF7280 0.64 +1.4 29,913 + -0.2 29,913 + +0.1 29,913 + -0.9 29,914 - +3.7 29,914 - -0.6 29,914 - -0.3 29,956 + +0.9 30,025 - GFF7281 0.17 -0.1 30,043 + GFF7281 0.20 -0.9 30,044 - GFF7281 0.20 -0.4 30,044 - GFF7281 0.20 -0.9 30,049 + GFF7281 0.21 -0.4 30,049 + GFF7281 0.21 -0.2 30,049 + GFF7281 0.21 -0.0 30,049 + GFF7281 0.21 -0.3 30,050 - GFF7281 0.21 -0.4 30,050 - GFF7281 0.21 -0.2 30,050 - GFF7281 0.21 -1.2 30,050 - GFF7281 0.21 +0.5 30,050 - GFF7281 0.21 -0.2 30,050 - GFF7281 0.21 +0.0 30,050 - GFF7281 0.21 -1.2 30,050 - GFF7281 0.21 +0.4 30,050 - GFF7281 0.21 +0.5 30,050 - GFF7281 0.21 +1.7 30,050 - GFF7281 0.21 +0.4 30,098 + GFF7281 0.28 +1.3 30,099 - GFF7281 0.28 -1.9 30,099 - GFF7281 0.28 -0.3 30,138 - GFF7281 0.34 -0.5 30,254 - GFF7281 0.52 -0.1 30,289 - GFF7281 0.58 -0.5 30,402 + GFF7281 0.75 +0.3 30,403 - GFF7281 0.75 -1.0 30,450 + GFF7281 0.82 +0.0 30,450 + GFF7281 0.82 -0.4 30,450 + GFF7281 0.82 -0.4 30,450 + GFF7281 0.82 +0.4 30,451 - GFF7281 0.83 +0.5 30,451 - GFF7281 0.83 -0.2 30,451 - GFF7281 0.83 -1.3 30,483 + GFF7281 0.88 -0.3 30,484 - GFF7281 0.88 -0.2 30,576 - -0.1 30,576 - +0.7 30,576 - +1.7 30,584 - -0.2 30,634 + +0.3 30,634 + +1.7 30,635 - +0.1 30,649 - -0.9 30,665 - -0.3 30,665 - -1.1 30,665 - +1.5 30,665 - -0.5
Or see this region's nucleotide sequence