Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7175 and GFF7176 are separated by 49 nucleotides GFF7176 and GFF7177 are separated by 139 nucleotides GFF7177 and GFF7178 are separated by 14 nucleotides
GFF7175 - NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12), at 38,510 to 39,511
GFF7175
GFF7176 - Transketolase (EC 2.2.1.1), at 39,561 to 41,669
GFF7176
GFF7177 - S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B, at 41,809 to 42,189
GFF7177
GFF7178 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 42,204 to 42,914
GFF7178
Position (kb) 39
40
41
42 Strain fitness (log2 ratio) -2
-1
0
1 at 39.387 kb on + strand, within GFF7175 at 39.523 kb on + strand at 39.524 kb on + strand at 39.524 kb on + strand at 39.525 kb on - strand at 39.525 kb on - strand at 39.525 kb on - strand at 39.525 kb on - strand at 39.525 kb on - strand at 39.525 kb on - strand at 39.525 kb on - strand at 39.689 kb on - strand at 40.724 kb on - strand, within GFF7176 at 41.702 kb on - strand at 41.748 kb on + strand at 41.795 kb on + strand at 41.795 kb on + strand at 41.795 kb on + strand at 41.795 kb on + strand at 41.796 kb on - strand at 41.796 kb on - strand at 41.796 kb on - strand at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.064 kb on + strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.065 kb on - strand, within GFF7177 at 42.413 kb on + strand, within GFF7178
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 39,387 + GFF7175 0.88 +0.7 39,523 + -0.8 39,524 + +0.7 39,524 + -0.3 39,525 - +0.4 39,525 - +0.7 39,525 - -0.4 39,525 - +0.1 39,525 - -0.3 39,525 - +0.3 39,525 - +0.5 39,689 - +0.2 40,724 - GFF7176 0.55 -0.1 41,702 - -0.3 41,748 + -0.2 41,795 + +0.7 41,795 + +0.1 41,795 + -0.6 41,795 + -0.1 41,796 - +0.7 41,796 - +0.3 41,796 - +0.5 42,064 + GFF7177 0.67 -0.3 42,064 + GFF7177 0.67 +1.1 42,064 + GFF7177 0.67 -0.3 42,064 + GFF7177 0.67 +0.9 42,064 + GFF7177 0.67 +0.7 42,064 + GFF7177 0.67 +0.4 42,064 + GFF7177 0.67 -1.8 42,064 + GFF7177 0.67 +0.3 42,065 - GFF7177 0.67 +0.7 42,065 - GFF7177 0.67 -1.2 42,065 - GFF7177 0.67 -0.1 42,065 - GFF7177 0.67 -0.8 42,065 - GFF7177 0.67 +0.1 42,065 - GFF7177 0.67 +0.1 42,065 - GFF7177 0.67 -0.1 42,065 - GFF7177 0.67 +0.4 42,065 - GFF7177 0.67 -0.0 42,065 - GFF7177 0.67 -0.8 42,065 - GFF7177 0.67 +1.7 42,413 + GFF7178 0.29 +0.9
Or see this region's nucleotide sequence