Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6817 and GFF6818 are separated by 732 nucleotides GFF6818 and GFF6819 are separated by 333 nucleotides
GFF6817 - hypothetical protein, at 3 to 1,352
GFF6817
GFF6818 - hypothetical protein, at 2,085 to 5,882
GFF6818
GFF6819 - hypothetical protein, at 6,216 to 7,082
GFF6819
Position (kb) 2
3
4
5
6 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1.100 kb on + strand, within GFF6817 at 1.100 kb on + strand, within GFF6817 at 1.101 kb on - strand, within GFF6817 at 1.101 kb on - strand, within GFF6817 at 1.150 kb on - strand, within GFF6817 at 1.150 kb on - strand, within GFF6817 at 1.193 kb on + strand, within GFF6817 at 1.193 kb on + strand, within GFF6817 at 1.194 kb on - strand, within GFF6817 at 1.194 kb on - strand, within GFF6817 at 1.197 kb on + strand, within GFF6817 at 1.198 kb on - strand, within GFF6817 at 1.198 kb on - strand, within GFF6817 at 1.198 kb on - strand, within GFF6817 at 1.274 kb on - strand at 1.365 kb on + strand at 1.365 kb on + strand at 1.366 kb on - strand at 1.440 kb on + strand at 1.441 kb on - strand at 1.448 kb on + strand at 1.448 kb on + strand at 1.448 kb on + strand at 1.492 kb on + strand at 1.493 kb on - strand at 1.493 kb on - strand at 1.493 kb on - strand at 1.493 kb on - strand at 1.493 kb on - strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.677 kb on + strand at 1.790 kb on - strand at 1.826 kb on + strand at 1.826 kb on + strand at 1.826 kb on + strand at 1.826 kb on + strand at 1.826 kb on + strand at 1.826 kb on + strand at 1.827 kb on - strand at 1.827 kb on - strand at 1.828 kb on + strand at 1.829 kb on - strand at 1.982 kb on + strand at 1.983 kb on - strand at 1.983 kb on - strand at 1.983 kb on - strand at 1.993 kb on + strand at 2.228 kb on - strand at 2.245 kb on - strand at 2.245 kb on - strand at 2.245 kb on - strand at 2.345 kb on + strand at 2.345 kb on + strand at 2.345 kb on + strand at 2.346 kb on - strand at 2.346 kb on - strand at 2.391 kb on + strand at 2.391 kb on + strand at 2.392 kb on - strand at 2.496 kb on + strand, within GFF6818 at 2.497 kb on - strand, within GFF6818 at 2.497 kb on - strand, within GFF6818 at 2.571 kb on + strand, within GFF6818 at 2.571 kb on + strand, within GFF6818 at 2.572 kb on - strand, within GFF6818 at 2.572 kb on - strand, within GFF6818 at 2.572 kb on - strand, within GFF6818 at 2.756 kb on - strand, within GFF6818 at 2.756 kb on - strand, within GFF6818 at 2.756 kb on - strand, within GFF6818 at 2.756 kb on - strand, within GFF6818 at 2.934 kb on - strand, within GFF6818 at 2.945 kb on - strand, within GFF6818 at 2.964 kb on + strand, within GFF6818 at 2.964 kb on + strand, within GFF6818 at 2.965 kb on - strand, within GFF6818 at 2.965 kb on - strand, within GFF6818 at 2.965 kb on - strand, within GFF6818 at 2.965 kb on - strand, within GFF6818 at 2.970 kb on + strand, within GFF6818 at 2.970 kb on + strand, within GFF6818 at 2.970 kb on + strand, within GFF6818 at 2.971 kb on - strand, within GFF6818 at 2.980 kb on + strand, within GFF6818 at 2.980 kb on + strand, within GFF6818 at 2.981 kb on - strand, within GFF6818 at 3.073 kb on + strand, within GFF6818 at 3.073 kb on + strand, within GFF6818 at 3.074 kb on - strand, within GFF6818 at 3.074 kb on - strand, within GFF6818 at 3.074 kb on - strand, within GFF6818 at 3.250 kb on + strand, within GFF6818 at 3.250 kb on + strand, within GFF6818 at 3.251 kb on - strand, within GFF6818 at 3.251 kb on - strand, within GFF6818 at 3.782 kb on + strand, within GFF6818 at 4.065 kb on + strand, within GFF6818 at 4.065 kb on + strand, within GFF6818 at 4.066 kb on - strand, within GFF6818 at 4.066 kb on - strand, within GFF6818 at 4.066 kb on - strand, within GFF6818 at 4.066 kb on - strand, within GFF6818 at 4.068 kb on - strand, within GFF6818 at 4.121 kb on - strand, within GFF6818 at 4.121 kb on - strand, within GFF6818 at 4.152 kb on - strand, within GFF6818 at 4.233 kb on + strand, within GFF6818 at 4.234 kb on - strand, within GFF6818 at 4.279 kb on - strand, within GFF6818 at 4.279 kb on - strand, within GFF6818 at 4.300 kb on + strand, within GFF6818 at 4.300 kb on + strand, within GFF6818 at 4.300 kb on + strand, within GFF6818 at 4.417 kb on - strand, within GFF6818 at 4.493 kb on + strand, within GFF6818 at 4.494 kb on - strand, within GFF6818 at 4.494 kb on - strand, within GFF6818 at 4.592 kb on - strand, within GFF6818 at 4.592 kb on - strand, within GFF6818 at 4.592 kb on - strand, within GFF6818 at 4.792 kb on + strand, within GFF6818 at 4.792 kb on + strand, within GFF6818 at 4.792 kb on + strand, within GFF6818 at 4.793 kb on - strand, within GFF6818 at 4.793 kb on - strand, within GFF6818 at 4.793 kb on - strand, within GFF6818 at 4.793 kb on - strand, within GFF6818 at 4.793 kb on - strand, within GFF6818 at 4.793 kb on - strand, within GFF6818 at 4.793 kb on - strand, within GFF6818 at 4.854 kb on + strand, within GFF6818 at 4.860 kb on + strand, within GFF6818 at 4.861 kb on - strand, within GFF6818 at 4.861 kb on - strand, within GFF6818 at 4.861 kb on - strand, within GFF6818 at 4.861 kb on - strand, within GFF6818 at 4.875 kb on + strand, within GFF6818 at 5.092 kb on + strand, within GFF6818 at 5.234 kb on + strand, within GFF6818 at 5.310 kb on + strand, within GFF6818 at 5.310 kb on + strand, within GFF6818 at 5.310 kb on + strand, within GFF6818 at 5.311 kb on - strand, within GFF6818 at 5.311 kb on - strand, within GFF6818 at 5.311 kb on - strand, within GFF6818 at 5.311 kb on - strand, within GFF6818 at 5.313 kb on + strand, within GFF6818 at 5.313 kb on + strand, within GFF6818 at 5.313 kb on + strand, within GFF6818 at 5.313 kb on + strand, within GFF6818 at 5.313 kb on + strand, within GFF6818 at 5.313 kb on + strand, within GFF6818 at 5.314 kb on - strand, within GFF6818 at 5.314 kb on - strand, within GFF6818 at 5.314 kb on - strand, within GFF6818 at 5.325 kb on + strand, within GFF6818 at 5.325 kb on + strand, within GFF6818 at 5.326 kb on - strand, within GFF6818 at 5.326 kb on - strand, within GFF6818 at 5.362 kb on - strand, within GFF6818 at 5.496 kb on + strand, within GFF6818 at 5.497 kb on - strand, within GFF6818 at 5.497 kb on - strand, within GFF6818 at 5.497 kb on - strand, within GFF6818 at 5.497 kb on - strand, within GFF6818 at 5.497 kb on - strand, within GFF6818 at 5.558 kb on + strand at 5.559 kb on - strand at 5.559 kb on - strand at 5.567 kb on - strand at 5.567 kb on - strand at 5.583 kb on + strand at 5.583 kb on + strand at 5.583 kb on + strand at 5.584 kb on - strand at 5.584 kb on - strand at 5.605 kb on + strand at 5.605 kb on + strand at 5.631 kb on - strand at 5.704 kb on + strand at 5.704 kb on + strand at 5.704 kb on + strand at 5.705 kb on - strand at 5.738 kb on + strand at 5.739 kb on - strand at 5.795 kb on + strand at 5.795 kb on + strand at 5.834 kb on + strand at 5.872 kb on + strand at 5.873 kb on - strand at 5.873 kb on - strand at 5.873 kb on - strand at 5.873 kb on - strand at 5.880 kb on + strand at 5.880 kb on + strand at 5.917 kb on + strand at 5.918 kb on - strand at 5.918 kb on - strand at 6.050 kb on + strand at 6.050 kb on + strand at 6.050 kb on + strand at 6.050 kb on + strand at 6.051 kb on - strand at 6.051 kb on - strand at 6.051 kb on - strand at 6.051 kb on - strand at 6.051 kb on - strand at 6.051 kb on - strand at 6.301 kb on - strand at 6.657 kb on + strand, within GFF6819 at 6.715 kb on - strand, within GFF6819
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 1,100 + GFF6817 0.81 -0.6 1,100 + GFF6817 0.81 -0.2 1,101 - GFF6817 0.81 -0.1 1,101 - GFF6817 0.81 +0.4 1,150 - GFF6817 0.85 -0.1 1,150 - GFF6817 0.85 +1.7 1,193 + GFF6817 0.88 +0.1 1,193 + GFF6817 0.88 +0.4 1,194 - GFF6817 0.88 +0.5 1,194 - GFF6817 0.88 +0.2 1,197 + GFF6817 0.88 -0.0 1,198 - GFF6817 0.89 -0.9 1,198 - GFF6817 0.89 +0.0 1,198 - GFF6817 0.89 +0.0 1,274 - -0.8 1,365 + +1.6 1,365 + -1.4 1,366 - +0.0 1,440 + -1.1 1,441 - +0.7 1,448 + -1.4 1,448 + +0.1 1,448 + -0.7 1,492 + -0.4 1,493 - -0.9 1,493 - -0.1 1,493 - +1.2 1,493 - +0.3 1,493 - -1.1 1,567 + +0.4 1,567 + -0.0 1,677 + +0.4 1,790 - -0.1 1,826 + -0.2 1,826 + +0.0 1,826 + +0.4 1,826 + +0.4 1,826 + +0.4 1,826 + -1.8 1,827 - +0.6 1,827 - -0.3 1,828 + +1.0 1,829 - +0.0 1,982 + -0.2 1,983 - +0.1 1,983 - +1.7 1,983 - -0.0 1,993 + -0.2 2,228 - +1.1 2,245 - -0.4 2,245 - -0.3 2,245 - -0.8 2,345 + +0.4 2,345 + +1.1 2,345 + -0.0 2,346 - -0.3 2,346 - -0.2 2,391 + -1.6 2,391 + +0.3 2,392 - +0.4 2,496 + GFF6818 0.11 +0.4 2,497 - GFF6818 0.11 -0.1 2,497 - GFF6818 0.11 +0.9 2,571 + GFF6818 0.13 +0.1 2,571 + GFF6818 0.13 -0.3 2,572 - GFF6818 0.13 -1.0 2,572 - GFF6818 0.13 -1.0 2,572 - GFF6818 0.13 -0.2 2,756 - GFF6818 0.18 -1.3 2,756 - GFF6818 0.18 -0.2 2,756 - GFF6818 0.18 +0.7 2,756 - GFF6818 0.18 +0.7 2,934 - GFF6818 0.22 +1.1 2,945 - GFF6818 0.23 +0.1 2,964 + GFF6818 0.23 -0.4 2,964 + GFF6818 0.23 +0.1 2,965 - GFF6818 0.23 +0.7 2,965 - GFF6818 0.23 -0.4 2,965 - GFF6818 0.23 +0.5 2,965 - GFF6818 0.23 -0.6 2,970 + GFF6818 0.23 +0.3 2,970 + GFF6818 0.23 -1.2 2,970 + GFF6818 0.23 +0.3 2,971 - GFF6818 0.23 +0.3 2,980 + GFF6818 0.24 +0.1 2,980 + GFF6818 0.24 -0.5 2,981 - GFF6818 0.24 -0.3 3,073 + GFF6818 0.26 -0.2 3,073 + GFF6818 0.26 -0.3 3,074 - GFF6818 0.26 +0.1 3,074 - GFF6818 0.26 -0.7 3,074 - GFF6818 0.26 -0.2 3,250 + GFF6818 0.31 -0.4 3,250 + GFF6818 0.31 -1.6 3,251 - GFF6818 0.31 -0.7 3,251 - GFF6818 0.31 -1.9 3,782 + GFF6818 0.45 +0.1 4,065 + GFF6818 0.52 -0.2 4,065 + GFF6818 0.52 +0.4 4,066 - GFF6818 0.52 +0.0 4,066 - GFF6818 0.52 -0.3 4,066 - GFF6818 0.52 -0.5 4,066 - GFF6818 0.52 -1.0 4,068 - GFF6818 0.52 -0.1 4,121 - GFF6818 0.54 -0.6 4,121 - GFF6818 0.54 +0.4 4,152 - GFF6818 0.54 -0.1 4,233 + GFF6818 0.57 +0.3 4,234 - GFF6818 0.57 +1.7 4,279 - GFF6818 0.58 +0.2 4,279 - GFF6818 0.58 -1.5 4,300 + GFF6818 0.58 +0.5 4,300 + GFF6818 0.58 +0.1 4,300 + GFF6818 0.58 -0.4 4,417 - GFF6818 0.61 -0.6 4,493 + GFF6818 0.63 +0.4 4,494 - GFF6818 0.63 -0.7 4,494 - GFF6818 0.63 -0.8 4,592 - GFF6818 0.66 +1.0 4,592 - GFF6818 0.66 -1.0 4,592 - GFF6818 0.66 +0.7 4,792 + GFF6818 0.71 -0.0 4,792 + GFF6818 0.71 +0.7 4,792 + GFF6818 0.71 -0.4 4,793 - GFF6818 0.71 -0.4 4,793 - GFF6818 0.71 -0.9 4,793 - GFF6818 0.71 +0.0 4,793 - GFF6818 0.71 +1.3 4,793 - GFF6818 0.71 +0.1 4,793 - GFF6818 0.71 -0.0 4,793 - GFF6818 0.71 -1.0 4,854 + GFF6818 0.73 -1.0 4,860 + GFF6818 0.73 +0.1 4,861 - GFF6818 0.73 +0.4 4,861 - GFF6818 0.73 -0.9 4,861 - GFF6818 0.73 -0.7 4,861 - GFF6818 0.73 -0.4 4,875 + GFF6818 0.73 +1.0 5,092 + GFF6818 0.79 +1.4 5,234 + GFF6818 0.83 +0.2 5,310 + GFF6818 0.85 -0.3 5,310 + GFF6818 0.85 -0.7 5,310 + GFF6818 0.85 +1.7 5,311 - GFF6818 0.85 +0.4 5,311 - GFF6818 0.85 -0.4 5,311 - GFF6818 0.85 +1.1 5,311 - GFF6818 0.85 -0.2 5,313 + GFF6818 0.85 -0.3 5,313 + GFF6818 0.85 +0.2 5,313 + GFF6818 0.85 +0.1 5,313 + GFF6818 0.85 +0.7 5,313 + GFF6818 0.85 +0.8 5,313 + GFF6818 0.85 -0.1 5,314 - GFF6818 0.85 -0.5 5,314 - GFF6818 0.85 -0.4 5,314 - GFF6818 0.85 -0.1 5,325 + GFF6818 0.85 -0.3 5,325 + GFF6818 0.85 +0.1 5,326 - GFF6818 0.85 +0.4 5,326 - GFF6818 0.85 -1.1 5,362 - GFF6818 0.86 -0.0 5,496 + GFF6818 0.90 -0.2 5,497 - GFF6818 0.90 +1.7 5,497 - GFF6818 0.90 -0.3 5,497 - GFF6818 0.90 +1.1 5,497 - GFF6818 0.90 +0.7 5,497 - GFF6818 0.90 +1.1 5,558 + -0.3 5,559 - +0.1 5,559 - -0.0 5,567 - +0.1 5,567 - -0.4 5,583 + -0.3 5,583 + -0.0 5,583 + +0.0 5,584 - +0.0 5,584 - +1.4 5,605 + +0.6 5,605 + +3.3 5,631 - -0.9 5,704 + -0.4 5,704 + -1.1 5,704 + -0.3 5,705 - -0.6 5,738 + -0.5 5,739 - +0.7 5,795 + -0.2 5,795 + +2.7 5,834 + +0.7 5,872 + -0.1 5,873 - -0.3 5,873 - -0.3 5,873 - -0.5 5,873 - +0.7 5,880 + -0.2 5,880 + -0.3 5,917 + +0.1 5,918 - -0.9 5,918 - -0.3 6,050 + +0.0 6,050 + -0.0 6,050 + -0.4 6,050 + +0.5 6,051 - +0.3 6,051 - -0.0 6,051 - +0.0 6,051 - +1.3 6,051 - -0.1 6,051 - +0.7 6,301 - -0.6 6,657 + GFF6819 0.51 -0.0 6,715 - GFF6819 0.58 +0.2
Or see this region's nucleotide sequence