Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6705 and GFF6706 are separated by 81 nucleotides GFF6706 and GFF6707 are separated by 0 nucleotides GFF6707 and GFF6708 are separated by 195 nucleotides
GFF6705 - hypothetical protein, at 13,495 to 14,268
GFF6705
GFF6706 - ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92), at 14,350 to 14,976
GFF6706
GFF6707 - RidA/YER057c/UK114 superfamily protein, at 14,977 to 15,366
GFF6707
GFF6708 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 15,562 to 17,142
GFF6708
Position (kb) 14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 13.520 kb on + strand at 13.520 kb on + strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.521 kb on - strand at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.693 kb on + strand, within GFF6705 at 13.694 kb on - strand, within GFF6705 at 13.694 kb on - strand, within GFF6705 at 13.728 kb on - strand, within GFF6705 at 13.874 kb on + strand, within GFF6705 at 13.874 kb on + strand, within GFF6705 at 13.874 kb on + strand, within GFF6705 at 13.943 kb on - strand, within GFF6705 at 13.943 kb on - strand, within GFF6705 at 14.050 kb on - strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.153 kb on + strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.154 kb on - strand, within GFF6705 at 14.252 kb on + strand at 14.252 kb on + strand at 14.253 kb on - strand at 14.253 kb on - strand at 14.253 kb on - strand at 14.285 kb on - strand at 14.430 kb on + strand, within GFF6706 at 14.431 kb on + strand, within GFF6706 at 14.432 kb on - strand, within GFF6706 at 14.432 kb on - strand, within GFF6706 at 14.859 kb on + strand, within GFF6706 at 14.860 kb on - strand, within GFF6706 at 14.993 kb on + strand at 14.993 kb on + strand at 14.993 kb on + strand at 14.993 kb on + strand at 14.994 kb on - strand at 14.994 kb on - strand at 14.994 kb on - strand at 15.077 kb on + strand, within GFF6707 at 15.077 kb on + strand, within GFF6707 at 15.077 kb on + strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.078 kb on - strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.086 kb on + strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.087 kb on - strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.275 kb on + strand, within GFF6707 at 15.276 kb on - strand, within GFF6707 at 15.276 kb on - strand, within GFF6707 at 15.276 kb on - strand, within GFF6707 at 15.276 kb on - strand, within GFF6707 at 15.353 kb on + strand at 15.353 kb on + strand at 15.354 kb on - strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.491 kb on + strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.492 kb on - strand at 15.787 kb on + strand, within GFF6708 at 15.788 kb on - strand, within GFF6708 at 15.788 kb on - strand, within GFF6708 at 15.799 kb on + strand, within GFF6708 at 15.799 kb on + strand, within GFF6708 at 15.799 kb on + strand, within GFF6708 at 15.799 kb on + strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.800 kb on - strand, within GFF6708 at 15.877 kb on + strand, within GFF6708 at 15.877 kb on + strand, within GFF6708 at 15.877 kb on + strand, within GFF6708 at 15.878 kb on - strand, within GFF6708 at 15.878 kb on - strand, within GFF6708 at 15.878 kb on - strand, within GFF6708
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,520 + +0.1 13,520 + -0.9 13,521 - -0.3 13,521 - +3.5 13,521 - -0.3 13,521 - -0.8 13,693 + GFF6705 0.26 -0.4 13,693 + GFF6705 0.26 -0.4 13,693 + GFF6705 0.26 -0.3 13,693 + GFF6705 0.26 +1.3 13,693 + GFF6705 0.26 +0.3 13,694 - GFF6705 0.26 -0.8 13,694 - GFF6705 0.26 -1.9 13,728 - GFF6705 0.30 -0.8 13,874 + GFF6705 0.49 -1.3 13,874 + GFF6705 0.49 +0.7 13,874 + GFF6705 0.49 -0.5 13,943 - GFF6705 0.58 +0.2 13,943 - GFF6705 0.58 +0.2 14,050 - GFF6705 0.72 -0.1 14,153 + GFF6705 0.85 -1.2 14,153 + GFF6705 0.85 +0.8 14,153 + GFF6705 0.85 -0.5 14,153 + GFF6705 0.85 +0.3 14,153 + GFF6705 0.85 +0.0 14,153 + GFF6705 0.85 -0.4 14,153 + GFF6705 0.85 +0.2 14,153 + GFF6705 0.85 +1.0 14,154 - GFF6705 0.85 +0.6 14,154 - GFF6705 0.85 -0.2 14,154 - GFF6705 0.85 +0.8 14,154 - GFF6705 0.85 +0.5 14,154 - GFF6705 0.85 -0.8 14,154 - GFF6705 0.85 -1.1 14,154 - GFF6705 0.85 -0.6 14,154 - GFF6705 0.85 +0.9 14,154 - GFF6705 0.85 +0.2 14,154 - GFF6705 0.85 -0.3 14,252 + -1.2 14,252 + +1.0 14,253 - -0.2 14,253 - -0.3 14,253 - +0.5 14,285 - +0.3 14,430 + GFF6706 0.13 -0.1 14,431 + GFF6706 0.13 -0.7 14,432 - GFF6706 0.13 -1.3 14,432 - GFF6706 0.13 +0.4 14,859 + GFF6706 0.81 -1.5 14,860 - GFF6706 0.81 -1.0 14,993 + -1.0 14,993 + -0.9 14,993 + +0.2 14,993 + -0.2 14,994 - +1.0 14,994 - -0.0 14,994 - -0.1 15,077 + GFF6707 0.26 -1.0 15,077 + GFF6707 0.26 -0.3 15,077 + GFF6707 0.26 -1.1 15,078 - GFF6707 0.26 +1.1 15,078 - GFF6707 0.26 -0.3 15,078 - GFF6707 0.26 -1.4 15,078 - GFF6707 0.26 +1.7 15,086 + GFF6707 0.28 -0.1 15,086 + GFF6707 0.28 -0.3 15,086 + GFF6707 0.28 +0.2 15,086 + GFF6707 0.28 -0.2 15,086 + GFF6707 0.28 -0.9 15,086 + GFF6707 0.28 -0.2 15,086 + GFF6707 0.28 +0.7 15,086 + GFF6707 0.28 -1.0 15,086 + GFF6707 0.28 -2.4 15,087 - GFF6707 0.28 -0.1 15,087 - GFF6707 0.28 +0.6 15,087 - GFF6707 0.28 -0.4 15,087 - GFF6707 0.28 +0.7 15,087 - GFF6707 0.28 -1.4 15,087 - GFF6707 0.28 +0.5 15,087 - GFF6707 0.28 -0.7 15,087 - GFF6707 0.28 -0.1 15,087 - GFF6707 0.28 +0.5 15,087 - GFF6707 0.28 -1.1 15,087 - GFF6707 0.28 +0.1 15,087 - GFF6707 0.28 -1.1 15,087 - GFF6707 0.28 -0.3 15,087 - GFF6707 0.28 -1.4 15,087 - GFF6707 0.28 +0.0 15,275 + GFF6707 0.76 -0.2 15,275 + GFF6707 0.76 +0.8 15,275 + GFF6707 0.76 -0.1 15,275 + GFF6707 0.76 -0.8 15,275 + GFF6707 0.76 -0.2 15,275 + GFF6707 0.76 -0.4 15,275 + GFF6707 0.76 +0.1 15,276 - GFF6707 0.77 -0.2 15,276 - GFF6707 0.77 -0.5 15,276 - GFF6707 0.77 +0.8 15,276 - GFF6707 0.77 +0.9 15,353 + +0.7 15,353 + +0.9 15,354 - -0.7 15,491 + +1.5 15,491 + -0.3 15,491 + +0.4 15,491 + -1.0 15,491 + +1.2 15,491 + -0.3 15,491 + -1.0 15,491 + -0.1 15,491 + -0.2 15,491 + +0.9 15,491 + +0.8 15,491 + -3.1 15,491 + +0.5 15,491 + -1.1 15,491 + -0.2 15,492 - -0.7 15,492 - +1.0 15,492 - +1.8 15,492 - -0.2 15,492 - +0.8 15,492 - -0.4 15,492 - -0.4 15,492 - +0.0 15,492 - -1.1 15,492 - +1.5 15,492 - +0.6 15,492 - +0.2 15,492 - +0.3 15,492 - +0.7 15,492 - -0.6 15,492 - +0.2 15,492 - -0.4 15,492 - -0.5 15,492 - -0.0 15,787 + GFF6708 0.14 -0.2 15,788 - GFF6708 0.14 -0.7 15,788 - GFF6708 0.14 -0.2 15,799 + GFF6708 0.15 -0.4 15,799 + GFF6708 0.15 -1.1 15,799 + GFF6708 0.15 -0.5 15,799 + GFF6708 0.15 -1.8 15,800 - GFF6708 0.15 -0.1 15,800 - GFF6708 0.15 +0.9 15,800 - GFF6708 0.15 -0.3 15,800 - GFF6708 0.15 +0.6 15,800 - GFF6708 0.15 +0.3 15,800 - GFF6708 0.15 -0.1 15,800 - GFF6708 0.15 -0.2 15,877 + GFF6708 0.20 -0.5 15,877 + GFF6708 0.20 +0.5 15,877 + GFF6708 0.20 +0.7 15,878 - GFF6708 0.20 -0.5 15,878 - GFF6708 0.20 -0.1 15,878 - GFF6708 0.20 +1.3
Or see this region's nucleotide sequence