Strain Fitness in Variovorax sp. SCN45 around GFF6698

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6696 and GFF6697 are separated by 99 nucleotidesGFF6697 and GFF6698 are separated by 41 nucleotidesGFF6698 and GFF6699 are separated by 175 nucleotides GFF6696 - Ubiquinol-cytochrome C reductase, cytochrome C1 subunit, at 4,613 to 5,389 GFF6696 GFF6697 - Stringent starvation protein A, at 5,489 to 6,100 GFF6697 GFF6698 - ClpXP protease specificity-enhancing factor SspB, at 6,142 to 6,723 GFF6698 GFF6699 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 6,899 to 8,065 GFF6699 Position (kb) 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 5.228 kb on + strand, within GFF6696at 5.228 kb on + strand, within GFF6696at 5.258 kb on + strand, within GFF6696at 5.258 kb on + strand, within GFF6696at 5.259 kb on - strand, within GFF6696at 5.369 kb on + strandat 5.388 kb on - strandat 6.098 kb on + strandat 6.098 kb on + strandat 6.098 kb on + strandat 6.099 kb on - strandat 6.099 kb on - strandat 6.099 kb on - strandat 6.102 kb on + strandat 6.102 kb on + strandat 6.102 kb on + strandat 6.103 kb on - strandat 6.103 kb on - strandat 6.103 kb on - strandat 6.178 kb on + strandat 6.184 kb on - strandat 6.196 kb on + strandat 6.196 kb on + strandat 6.196 kb on + strandat 6.197 kb on - strandat 6.197 kb on - strandat 6.197 kb on - strandat 6.197 kb on - strandat 6.229 kb on + strand, within GFF6698at 6.229 kb on + strand, within GFF6698at 6.229 kb on + strand, within GFF6698at 6.230 kb on - strand, within GFF6698at 6.230 kb on - strand, within GFF6698at 6.230 kb on - strand, within GFF6698at 6.275 kb on - strand, within GFF6698at 6.421 kb on + strand, within GFF6698at 6.421 kb on + strand, within GFF6698at 6.421 kb on + strand, within GFF6698at 6.421 kb on + strand, within GFF6698at 6.422 kb on - strand, within GFF6698at 6.422 kb on - strand, within GFF6698at 6.422 kb on - strand, within GFF6698at 6.632 kb on + strand, within GFF6698at 6.632 kb on + strand, within GFF6698at 6.633 kb on - strand, within GFF6698at 6.633 kb on - strand, within GFF6698at 6.633 kb on - strand, within GFF6698at 6.633 kb on - strand, within GFF6698at 6.756 kb on + strandat 6.756 kb on + strandat 6.942 kb on + strandat 6.943 kb on - strandat 7.083 kb on + strand, within GFF6699at 7.083 kb on + strand, within GFF6699at 7.083 kb on + strand, within GFF6699at 7.083 kb on + strand, within GFF6699at 7.083 kb on + strand, within GFF6699at 7.083 kb on + strand, within GFF6699at 7.083 kb on + strand, within GFF6699at 7.083 kb on + strand, within GFF6699at 7.084 kb on - strand, within GFF6699at 7.084 kb on - strand, within GFF6699at 7.084 kb on - strand, within GFF6699at 7.084 kb on - strand, within GFF6699at 7.084 kb on - strand, within GFF6699at 7.084 kb on - strand, within GFF6699at 7.084 kb on - strand, within GFF6699at 7.084 kb on - strand, within GFF6699at 7.084 kb on - strand, within GFF6699at 7.084 kb on - strand, within GFF6699at 7.084 kb on - strand, within GFF6699at 7.084 kb on - strand, within GFF6699at 7.631 kb on + strand, within GFF6699at 7.631 kb on + strand, within GFF6699at 7.632 kb on - strand, within GFF6699at 7.632 kb on - strand, within GFF6699at 7.632 kb on - strand, within GFF6699at 7.632 kb on - strand, within GFF6699

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
5,228 + GFF6696 0.79 -0.2
5,228 + GFF6696 0.79 -0.2
5,258 + GFF6696 0.83 -1.2
5,258 + GFF6696 0.83 -1.7
5,259 - GFF6696 0.83 -0.1
5,369 + -0.0
5,388 - +0.8
6,098 + -0.0
6,098 + -1.4
6,098 + +1.0
6,099 - -0.2
6,099 - +1.4
6,099 - -0.4
6,102 + -1.1
6,102 + +1.5
6,102 + -0.1
6,103 - -0.4
6,103 - +0.1
6,103 - +0.5
6,178 + +0.2
6,184 - +0.7
6,196 + +0.3
6,196 + -1.0
6,196 + +1.6
6,197 - +0.5
6,197 - -0.4
6,197 - +0.1
6,197 - -1.8
6,229 + GFF6698 0.15 +0.2
6,229 + GFF6698 0.15 -0.7
6,229 + GFF6698 0.15 +0.0
6,230 - GFF6698 0.15 -0.4
6,230 - GFF6698 0.15 -0.4
6,230 - GFF6698 0.15 -1.0
6,275 - GFF6698 0.23 -0.7
6,421 + GFF6698 0.48 -1.5
6,421 + GFF6698 0.48 -0.4
6,421 + GFF6698 0.48 +0.0
6,421 + GFF6698 0.48 -0.5
6,422 - GFF6698 0.48 -1.0
6,422 - GFF6698 0.48 -1.1
6,422 - GFF6698 0.48 -0.1
6,632 + GFF6698 0.84 -0.3
6,632 + GFF6698 0.84 -0.2
6,633 - GFF6698 0.84 -0.8
6,633 - GFF6698 0.84 -0.8
6,633 - GFF6698 0.84 +0.5
6,633 - GFF6698 0.84 -0.3
6,756 + -1.4
6,756 + +1.5
6,942 + -1.0
6,943 - -0.5
7,083 + GFF6699 0.16 -1.1
7,083 + GFF6699 0.16 -0.3
7,083 + GFF6699 0.16 +0.2
7,083 + GFF6699 0.16 -0.3
7,083 + GFF6699 0.16 +1.5
7,083 + GFF6699 0.16 +0.1
7,083 + GFF6699 0.16 +0.2
7,083 + GFF6699 0.16 +1.5
7,084 - GFF6699 0.16 -0.2
7,084 - GFF6699 0.16 -1.4
7,084 - GFF6699 0.16 -0.1
7,084 - GFF6699 0.16 -0.0
7,084 - GFF6699 0.16 -0.4
7,084 - GFF6699 0.16 -0.4
7,084 - GFF6699 0.16 -0.6
7,084 - GFF6699 0.16 -0.8
7,084 - GFF6699 0.16 +0.7
7,084 - GFF6699 0.16 -0.3
7,084 - GFF6699 0.16 -0.3
7,084 - GFF6699 0.16 -0.5
7,631 + GFF6699 0.63 -0.5
7,631 + GFF6699 0.63 +2.0
7,632 - GFF6699 0.63 -0.8
7,632 - GFF6699 0.63 -1.1
7,632 - GFF6699 0.63 +0.4
7,632 - GFF6699 0.63 -1.4

Or see this region's nucleotide sequence