Strain Fitness in Variovorax sp. SCN45 around GFF6649

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6648 and GFF6649 are separated by 11 nucleotidesGFF6649 and GFF6650 are separated by 156 nucleotides GFF6648 - hypothetical protein, at 21,375 to 23,114 GFF6648 GFF6649 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 23,126 to 23,950 GFF6649 GFF6650 - no description, at 24,107 to 24,991 GFF6650 Position (kb) 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 22.328 kb on + strand, within GFF6648at 22.328 kb on + strand, within GFF6648at 22.328 kb on + strand, within GFF6648at 22.328 kb on + strand, within GFF6648at 22.328 kb on + strand, within GFF6648at 22.328 kb on + strand, within GFF6648at 22.328 kb on + strand, within GFF6648at 22.328 kb on + strand, within GFF6648at 22.329 kb on - strand, within GFF6648at 22.329 kb on - strand, within GFF6648at 22.329 kb on - strand, within GFF6648at 22.329 kb on - strand, within GFF6648at 22.329 kb on - strand, within GFF6648at 22.329 kb on - strand, within GFF6648at 22.329 kb on - strand, within GFF6648at 22.329 kb on - strand, within GFF6648at 22.329 kb on - strand, within GFF6648at 22.332 kb on + strand, within GFF6648at 22.332 kb on + strand, within GFF6648at 22.332 kb on + strand, within GFF6648at 22.332 kb on + strand, within GFF6648at 22.332 kb on + strand, within GFF6648at 22.332 kb on + strand, within GFF6648at 22.332 kb on + strand, within GFF6648at 22.332 kb on + strand, within GFF6648at 22.332 kb on + strand, within GFF6648at 22.332 kb on + strand, within GFF6648at 22.332 kb on + strand, within GFF6648at 22.332 kb on + strand, within GFF6648at 22.333 kb on - strand, within GFF6648at 22.333 kb on - strand, within GFF6648at 22.333 kb on - strand, within GFF6648at 22.333 kb on - strand, within GFF6648at 22.333 kb on - strand, within GFF6648at 22.333 kb on - strand, within GFF6648at 22.333 kb on - strand, within GFF6648at 22.333 kb on - strand, within GFF6648at 22.333 kb on - strand, within GFF6648at 22.333 kb on - strand, within GFF6648at 22.333 kb on - strand, within GFF6648at 22.333 kb on - strand, within GFF6648at 22.333 kb on - strand, within GFF6648at 22.335 kb on + strand, within GFF6648at 22.335 kb on + strand, within GFF6648at 22.335 kb on + strand, within GFF6648at 22.335 kb on + strand, within GFF6648at 22.336 kb on - strand, within GFF6648at 22.336 kb on - strand, within GFF6648at 22.336 kb on - strand, within GFF6648at 22.336 kb on - strand, within GFF6648at 22.336 kb on - strand, within GFF6648at 22.336 kb on - strand, within GFF6648at 22.336 kb on - strand, within GFF6648at 22.336 kb on - strand, within GFF6648at 22.336 kb on - strand, within GFF6648at 22.336 kb on - strand, within GFF6648at 22.336 kb on - strand, within GFF6648at 22.353 kb on + strand, within GFF6648at 22.354 kb on - strand, within GFF6648at 22.354 kb on - strand, within GFF6648at 22.354 kb on - strand, within GFF6648at 23.194 kb on - strandat 23.194 kb on - strandat 23.229 kb on + strand, within GFF6649at 23.229 kb on + strand, within GFF6649at 23.229 kb on + strand, within GFF6649at 23.230 kb on - strand, within GFF6649at 23.230 kb on - strand, within GFF6649at 23.230 kb on - strand, within GFF6649at 23.334 kb on + strand, within GFF6649at 23.334 kb on + strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.335 kb on - strand, within GFF6649at 23.343 kb on + strand, within GFF6649at 23.343 kb on + strand, within GFF6649at 23.343 kb on + strand, within GFF6649at 23.343 kb on + strand, within GFF6649at 23.344 kb on - strand, within GFF6649at 23.344 kb on - strand, within GFF6649at 23.344 kb on - strand, within GFF6649at 23.763 kb on + strand, within GFF6649at 23.763 kb on + strand, within GFF6649at 23.954 kb on + strandat 23.954 kb on + strandat 23.954 kb on + strandat 23.954 kb on + strandat 23.954 kb on + strandat 23.954 kb on + strandat 23.955 kb on - strandat 23.955 kb on - strandat 23.955 kb on - strandat 23.955 kb on - strandat 23.955 kb on - strandat 23.955 kb on - strandat 23.976 kb on + strandat 24.022 kb on + strandat 24.022 kb on + strandat 24.022 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.026 kb on + strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.027 kb on - strandat 24.038 kb on + strandat 24.038 kb on + strandat 24.063 kb on + strandat 24.064 kb on - strandat 24.064 kb on - strandat 24.479 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.671 kb on + strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.672 kb on - strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.710 kb on + strand, within GFF6650at 24.711 kb on - strand, within GFF6650at 24.711 kb on - strand, within GFF6650at 24.711 kb on - strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.806 kb on + strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.807 kb on - strand, within GFF6650at 24.854 kb on + strand, within GFF6650at 24.854 kb on + strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 24.855 kb on - strand, within GFF6650at 24.855 kb on - strand, within GFF6650

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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22,328 + GFF6648 0.55 -0.5
22,328 + GFF6648 0.55 -0.9
22,328 + GFF6648 0.55 -0.9
22,328 + GFF6648 0.55 -0.6
22,328 + GFF6648 0.55 +0.7
22,328 + GFF6648 0.55 +0.6
22,328 + GFF6648 0.55 -0.6
22,328 + GFF6648 0.55 -0.4
22,329 - GFF6648 0.55 +0.2
22,329 - GFF6648 0.55 +0.1
22,329 - GFF6648 0.55 -0.1
22,329 - GFF6648 0.55 -0.3
22,329 - GFF6648 0.55 +0.1
22,329 - GFF6648 0.55 -1.3
22,329 - GFF6648 0.55 -0.4
22,329 - GFF6648 0.55 +0.8
22,329 - GFF6648 0.55 -0.8
22,332 + GFF6648 0.55 -0.4
22,332 + GFF6648 0.55 +1.0
22,332 + GFF6648 0.55 +0.0
22,332 + GFF6648 0.55 -2.4
22,332 + GFF6648 0.55 -0.6
22,332 + GFF6648 0.55 -0.3
22,332 + GFF6648 0.55 +0.2
22,332 + GFF6648 0.55 +0.2
22,332 + GFF6648 0.55 +0.2
22,332 + GFF6648 0.55 -0.5
22,332 + GFF6648 0.55 -0.8
22,332 + GFF6648 0.55 -0.8
22,333 - GFF6648 0.55 -1.1
22,333 - GFF6648 0.55 -0.5
22,333 - GFF6648 0.55 -1.2
22,333 - GFF6648 0.55 -1.0
22,333 - GFF6648 0.55 -0.4
22,333 - GFF6648 0.55 -0.1
22,333 - GFF6648 0.55 -0.5
22,333 - GFF6648 0.55 +1.2
22,333 - GFF6648 0.55 -0.1
22,333 - GFF6648 0.55 +0.2
22,333 - GFF6648 0.55 -0.0
22,333 - GFF6648 0.55 +0.2
22,333 - GFF6648 0.55 -0.8
22,335 + GFF6648 0.55 -0.2
22,335 + GFF6648 0.55 +0.2
22,335 + GFF6648 0.55 +0.6
22,335 + GFF6648 0.55 +0.3
22,336 - GFF6648 0.55 -1.5
22,336 - GFF6648 0.55 +0.6
22,336 - GFF6648 0.55 +1.0
22,336 - GFF6648 0.55 -0.6
22,336 - GFF6648 0.55 -0.7
22,336 - GFF6648 0.55 -0.1
22,336 - GFF6648 0.55 -0.1
22,336 - GFF6648 0.55 +0.2
22,336 - GFF6648 0.55 -0.3
22,336 - GFF6648 0.55 +0.1
22,336 - GFF6648 0.55 -1.0
22,353 + GFF6648 0.56 -0.5
22,354 - GFF6648 0.56 -0.8
22,354 - GFF6648 0.56 -0.1
22,354 - GFF6648 0.56 +0.2
23,194 - +0.1
23,194 - -0.7
23,229 + GFF6649 0.12 -0.3
23,229 + GFF6649 0.12 -0.4
23,229 + GFF6649 0.12 -0.5
23,230 - GFF6649 0.13 +0.0
23,230 - GFF6649 0.13 +0.5
23,230 - GFF6649 0.13 -0.8
23,334 + GFF6649 0.25 +0.3
23,334 + GFF6649 0.25 -0.8
23,335 - GFF6649 0.25 +0.4
23,335 - GFF6649 0.25 +0.6
23,335 - GFF6649 0.25 -0.8
23,335 - GFF6649 0.25 -0.0
23,335 - GFF6649 0.25 -0.4
23,335 - GFF6649 0.25 +0.0
23,335 - GFF6649 0.25 -1.0
23,343 + GFF6649 0.26 -0.1
23,343 + GFF6649 0.26 -0.7
23,343 + GFF6649 0.26 -0.5
23,343 + GFF6649 0.26 +0.6
23,344 - GFF6649 0.26 -1.4
23,344 - GFF6649 0.26 -0.5
23,344 - GFF6649 0.26 -0.8
23,763 + GFF6649 0.77 -0.9
23,763 + GFF6649 0.77 +1.3
23,954 + -0.7
23,954 + +1.5
23,954 + -0.5
23,954 + -0.2
23,954 + +0.0
23,954 + -0.6
23,955 - -0.3
23,955 - -0.5
23,955 - -0.5
23,955 - -0.5
23,955 - -0.2
23,955 - -1.3
23,976 + +0.8
24,022 + -0.8
24,022 + -1.0
24,022 + -0.0
24,026 + +0.2
24,026 + +0.0
24,026 + -0.7
24,026 + -0.6
24,026 + +0.0
24,026 + +1.8
24,026 + -1.0
24,026 + -0.3
24,026 + -1.5
24,026 + -1.0
24,026 + +0.8
24,027 - -1.0
24,027 - +1.2
24,027 - -0.6
24,027 - +0.2
24,027 - +1.0
24,027 - -0.1
24,027 - -0.2
24,027 - -0.7
24,027 - +1.2
24,027 - -1.6
24,027 - +0.2
24,027 - +0.1
24,027 - -0.3
24,038 + -0.6
24,038 + -1.1
24,063 + +0.0
24,064 - +0.9
24,064 - -1.9
24,479 + GFF6650 0.42 -0.5
24,671 + GFF6650 0.64 -0.2
24,671 + GFF6650 0.64 +0.1
24,671 + GFF6650 0.64 -0.0
24,671 + GFF6650 0.64 +0.7
24,671 + GFF6650 0.64 -0.3
24,671 + GFF6650 0.64 -1.5
24,671 + GFF6650 0.64 -0.2
24,671 + GFF6650 0.64 -0.2
24,671 + GFF6650 0.64 -0.5
24,671 + GFF6650 0.64 +0.3
24,671 + GFF6650 0.64 -0.2
24,671 + GFF6650 0.64 -1.0
24,672 - GFF6650 0.64 +0.3
24,672 - GFF6650 0.64 +0.2
24,672 - GFF6650 0.64 +0.1
24,672 - GFF6650 0.64 +1.0
24,672 - GFF6650 0.64 -0.1
24,672 - GFF6650 0.64 -0.2
24,672 - GFF6650 0.64 +0.2
24,672 - GFF6650 0.64 -0.3
24,672 - GFF6650 0.64 -0.6
24,672 - GFF6650 0.64 -1.2
24,672 - GFF6650 0.64 +0.0
24,672 - GFF6650 0.64 -1.4
24,672 - GFF6650 0.64 -0.3
24,672 - GFF6650 0.64 -0.0
24,672 - GFF6650 0.64 +0.6
24,672 - GFF6650 0.64 -1.8
24,672 - GFF6650 0.64 -1.6
24,710 + GFF6650 0.68 -0.3
24,710 + GFF6650 0.68 -0.8
24,710 + GFF6650 0.68 -0.1
24,710 + GFF6650 0.68 +0.1
24,710 + GFF6650 0.68 -0.7
24,711 - GFF6650 0.68 -0.0
24,711 - GFF6650 0.68 +0.6
24,711 - GFF6650 0.68 -1.2
24,806 + GFF6650 0.79 -0.7
24,806 + GFF6650 0.79 +0.2
24,806 + GFF6650 0.79 -0.2
24,806 + GFF6650 0.79 +0.2
24,806 + GFF6650 0.79 +0.8
24,806 + GFF6650 0.79 +0.4
24,806 + GFF6650 0.79 -0.0
24,806 + GFF6650 0.79 +0.0
24,806 + GFF6650 0.79 +0.4
24,807 - GFF6650 0.79 +1.2
24,807 - GFF6650 0.79 -2.5
24,807 - GFF6650 0.79 +0.8
24,807 - GFF6650 0.79 +0.3
24,807 - GFF6650 0.79 +0.5
24,807 - GFF6650 0.79 -1.0
24,807 - GFF6650 0.79 +0.6
24,807 - GFF6650 0.79 +0.0
24,854 + GFF6650 0.84 +0.4
24,854 + GFF6650 0.84 -0.4
24,855 - GFF6650 0.85 -0.5
24,855 - GFF6650 0.85 -0.3
24,855 - GFF6650 0.85 -0.4
24,855 - GFF6650 0.85 +0.3
24,855 - GFF6650 0.85 -0.2

Or see this region's nucleotide sequence