Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6593 and GFF6594 are separated by 83 nucleotides GFF6594 and GFF6595 are separated by 94 nucleotides GFF6595 and GFF6596 overlap by 23 nucleotides
GFF6593 - Alcohol dehydrogenase (EC 1.1.1.1), at 36,312 to 37,580
GFF6593
GFF6594 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 37,664 to 38,485
GFF6594
GFF6595 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 38,580 to 40,082
GFF6595
GFF6596 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 40,060 to 41,175
GFF6596
Position (kb) 38
39
40
41 Strain fitness (log2 ratio) -1
0
1
2 at 37.650 kb on + strand at 37.650 kb on + strand at 37.700 kb on + strand at 37.700 kb on + strand at 37.701 kb on - strand at 37.701 kb on - strand at 37.725 kb on - strand at 37.754 kb on + strand, within GFF6594 at 37.754 kb on + strand, within GFF6594 at 37.755 kb on - strand, within GFF6594 at 37.761 kb on + strand, within GFF6594 at 37.762 kb on - strand, within GFF6594 at 37.762 kb on - strand, within GFF6594 at 37.762 kb on - strand, within GFF6594 at 37.782 kb on - strand, within GFF6594 at 37.877 kb on + strand, within GFF6594 at 37.878 kb on - strand, within GFF6594 at 37.922 kb on + strand, within GFF6594 at 37.922 kb on + strand, within GFF6594 at 37.923 kb on - strand, within GFF6594 at 37.923 kb on - strand, within GFF6594 at 37.923 kb on - strand, within GFF6594 at 37.953 kb on - strand, within GFF6594 at 37.953 kb on - strand, within GFF6594 at 38.096 kb on + strand, within GFF6594 at 38.096 kb on + strand, within GFF6594 at 38.127 kb on - strand, within GFF6594 at 38.150 kb on + strand, within GFF6594 at 38.151 kb on - strand, within GFF6594 at 38.255 kb on + strand, within GFF6594 at 38.255 kb on + strand, within GFF6594 at 38.256 kb on - strand, within GFF6594 at 38.256 kb on - strand, within GFF6594 at 38.256 kb on - strand, within GFF6594 at 38.299 kb on + strand, within GFF6594 at 38.299 kb on + strand, within GFF6594 at 38.299 kb on + strand, within GFF6594 at 38.590 kb on + strand at 38.590 kb on + strand at 38.591 kb on - strand at 38.591 kb on - strand at 38.595 kb on - strand at 38.666 kb on - strand at 38.683 kb on + strand at 38.683 kb on + strand at 38.684 kb on - strand at 38.794 kb on + strand, within GFF6595 at 38.978 kb on - strand, within GFF6595 at 39.006 kb on + strand, within GFF6595 at 39.007 kb on - strand, within GFF6595 at 39.009 kb on + strand, within GFF6595 at 39.010 kb on - strand, within GFF6595 at 39.427 kb on - strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.630 kb on + strand, within GFF6595 at 39.631 kb on - strand, within GFF6595 at 39.631 kb on - strand, within GFF6595 at 39.631 kb on - strand, within GFF6595 at 39.709 kb on - strand, within GFF6595 at 39.709 kb on - strand, within GFF6595 at 40.094 kb on + strand at 40.094 kb on + strand at 40.371 kb on + strand, within GFF6596 at 40.469 kb on + strand, within GFF6596 at 40.510 kb on + strand, within GFF6596 at 40.581 kb on - strand, within GFF6596 at 40.641 kb on - strand, within GFF6596 at 40.646 kb on + strand, within GFF6596 at 40.932 kb on - strand, within GFF6596 at 40.960 kb on + strand, within GFF6596
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 37,650 + -0.4 37,650 + -0.6 37,700 + +0.5 37,700 + -0.4 37,701 - +0.2 37,701 - -0.0 37,725 - -0.9 37,754 + GFF6594 0.11 +1.4 37,754 + GFF6594 0.11 -0.3 37,755 - GFF6594 0.11 +0.3 37,761 + GFF6594 0.12 +2.3 37,762 - GFF6594 0.12 +0.7 37,762 - GFF6594 0.12 -1.0 37,762 - GFF6594 0.12 +1.3 37,782 - GFF6594 0.14 +0.3 37,877 + GFF6594 0.26 -0.1 37,878 - GFF6594 0.26 -1.0 37,922 + GFF6594 0.31 -0.4 37,922 + GFF6594 0.31 -0.1 37,923 - GFF6594 0.32 -0.3 37,923 - GFF6594 0.32 -0.0 37,923 - GFF6594 0.32 +0.0 37,953 - GFF6594 0.35 -0.9 37,953 - GFF6594 0.35 +0.3 38,096 + GFF6594 0.53 -0.3 38,096 + GFF6594 0.53 -0.5 38,127 - GFF6594 0.56 -0.8 38,150 + GFF6594 0.59 -0.3 38,151 - GFF6594 0.59 +0.2 38,255 + GFF6594 0.72 +1.0 38,255 + GFF6594 0.72 +0.3 38,256 - GFF6594 0.72 +0.2 38,256 - GFF6594 0.72 +0.0 38,256 - GFF6594 0.72 -1.1 38,299 + GFF6594 0.77 -0.2 38,299 + GFF6594 0.77 -0.8 38,299 + GFF6594 0.77 +0.7 38,590 + -1.6 38,590 + +1.7 38,591 - +1.4 38,591 - +0.7 38,595 - -0.1 38,666 - +0.3 38,683 + -0.0 38,683 + -0.1 38,684 - +0.2 38,794 + GFF6595 0.14 +0.0 38,978 - GFF6595 0.26 +0.3 39,006 + GFF6595 0.28 +0.2 39,007 - GFF6595 0.28 +0.4 39,009 + GFF6595 0.29 +0.9 39,010 - GFF6595 0.29 -0.5 39,427 - GFF6595 0.56 +0.9 39,630 + GFF6595 0.70 +0.3 39,630 + GFF6595 0.70 -0.2 39,630 + GFF6595 0.70 -0.1 39,630 + GFF6595 0.70 -0.8 39,630 + GFF6595 0.70 +0.7 39,631 - GFF6595 0.70 +0.3 39,631 - GFF6595 0.70 +0.3 39,631 - GFF6595 0.70 -0.3 39,709 - GFF6595 0.75 -0.7 39,709 - GFF6595 0.75 +0.1 40,094 + +1.7 40,094 + +1.2 40,371 + GFF6596 0.28 +1.1 40,469 + GFF6596 0.37 -0.3 40,510 + GFF6596 0.40 -0.3 40,581 - GFF6596 0.47 +0.5 40,641 - GFF6596 0.52 -0.0 40,646 + GFF6596 0.53 +0.2 40,932 - GFF6596 0.78 -1.3 40,960 + GFF6596 0.81 -0.1
Or see this region's nucleotide sequence