Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6576 and GFF6577 are separated by 12 nucleotides GFF6577 and GFF6578 overlap by 4 nucleotides GFF6578 and GFF6579 overlap by 4 nucleotides GFF6579 and GFF6580 overlap by 4 nucleotides GFF6580 and GFF6581 overlap by 4 nucleotides
GFF6576 - Conjugative transfer protein TrbE, at 17,046 to 19,520
GFF6576
GFF6577 - Conjugative transfer protein TrbD, at 19,533 to 19,805
GFF6577
GFF6578 - Conjugative transfer protein TrbC, at 19,802 to 20,179
GFF6578
GFF6579 - Conjugative transfer protein TrbB, at 20,176 to 21,213
GFF6579
GFF6580 - CopG domain-containing protein, at 21,210 to 21,674
GFF6580
GFF6581 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 21,671 to 23,680
GFF6581
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1 at 19.271 kb on + strand, within GFF6576 at 19.535 kb on - strand at 19.535 kb on - strand at 19.806 kb on - strand at 20.156 kb on - strand at 20.825 kb on + strand, within GFF6579 at 20.825 kb on + strand, within GFF6579 at 20.825 kb on + strand, within GFF6579 at 20.825 kb on + strand, within GFF6579 at 20.826 kb on - strand, within GFF6579 at 21.213 kb on + strand at 21.214 kb on - strand at 21.214 kb on - strand at 21.214 kb on - strand at 21.214 kb on - strand at 21.258 kb on - strand, within GFF6580 at 21.424 kb on + strand, within GFF6580 at 21.425 kb on - strand, within GFF6580 at 21.674 kb on + strand at 21.675 kb on - strand at 21.675 kb on - strand at 21.675 kb on - strand at 21.820 kb on - strand at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.887 kb on + strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 21.888 kb on - strand, within GFF6581 at 22.035 kb on + strand, within GFF6581 at 22.198 kb on - strand, within GFF6581 at 22.198 kb on - strand, within GFF6581
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 19,271 + GFF6576 0.90 +0.0 19,535 - +0.0 19,535 - -0.1 19,806 - +0.0 20,156 - -0.3 20,825 + GFF6579 0.63 +0.5 20,825 + GFF6579 0.63 +0.7 20,825 + GFF6579 0.63 +1.2 20,825 + GFF6579 0.63 +0.0 20,826 - GFF6579 0.63 -0.3 21,213 + +0.4 21,214 - -0.6 21,214 - +0.7 21,214 - -0.8 21,214 - +0.5 21,258 - GFF6580 0.10 -0.0 21,424 + GFF6580 0.46 +0.7 21,425 - GFF6580 0.46 -0.2 21,674 + +0.3 21,675 - +1.2 21,675 - -1.2 21,675 - -0.4 21,820 - -0.1 21,887 + GFF6581 0.11 -0.3 21,887 + GFF6581 0.11 +0.4 21,887 + GFF6581 0.11 +0.4 21,887 + GFF6581 0.11 -2.3 21,887 + GFF6581 0.11 +0.7 21,887 + GFF6581 0.11 +0.3 21,887 + GFF6581 0.11 +0.4 21,888 - GFF6581 0.11 +0.2 21,888 - GFF6581 0.11 +0.0 21,888 - GFF6581 0.11 +0.3 21,888 - GFF6581 0.11 -1.2 21,888 - GFF6581 0.11 -0.1 21,888 - GFF6581 0.11 +0.4 22,035 + GFF6581 0.18 -0.3 22,198 - GFF6581 0.26 -0.2 22,198 - GFF6581 0.26 -1.0
Or see this region's nucleotide sequence