Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6572 and GFF6573 overlap by 4 nucleotides GFF6573 and GFF6574 are separated by 12 nucleotides
GFF6572 - Conjugative transfer protein TrbG, at 13,220 to 14,227
GFF6572
GFF6573 - Conjugative transfer protein TrbF, at 14,224 to 14,928
GFF6573
GFF6574 - Conjugative transfer protein TrbL, at 14,941 to 16,266
GFF6574
Position (kb) 14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 13.329 kb on + strand, within GFF6572 at 13.330 kb on - strand, within GFF6572 at 13.330 kb on - strand, within GFF6572 at 13.347 kb on + strand, within GFF6572 at 13.348 kb on - strand, within GFF6572 at 13.348 kb on - strand, within GFF6572 at 13.434 kb on + strand, within GFF6572 at 13.434 kb on + strand, within GFF6572 at 13.434 kb on + strand, within GFF6572 at 13.435 kb on - strand, within GFF6572 at 13.435 kb on - strand, within GFF6572 at 13.435 kb on - strand, within GFF6572 at 13.659 kb on + strand, within GFF6572 at 13.659 kb on + strand, within GFF6572 at 13.660 kb on - strand, within GFF6572 at 13.762 kb on + strand, within GFF6572 at 13.762 kb on + strand, within GFF6572 at 13.762 kb on + strand, within GFF6572 at 13.860 kb on + strand, within GFF6572 at 13.860 kb on + strand, within GFF6572 at 13.860 kb on + strand, within GFF6572 at 13.861 kb on - strand, within GFF6572 at 13.861 kb on - strand, within GFF6572 at 13.861 kb on - strand, within GFF6572 at 13.869 kb on + strand, within GFF6572 at 13.870 kb on - strand, within GFF6572 at 13.914 kb on + strand, within GFF6572 at 13.914 kb on + strand, within GFF6572 at 13.914 kb on + strand, within GFF6572 at 13.915 kb on - strand, within GFF6572 at 13.915 kb on - strand, within GFF6572 at 13.915 kb on - strand, within GFF6572 at 14.209 kb on + strand at 14.210 kb on - strand at 14.210 kb on - strand at 14.210 kb on - strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.282 kb on + strand at 14.283 kb on - strand at 14.283 kb on - strand at 14.283 kb on - strand at 14.550 kb on - strand, within GFF6573 at 14.550 kb on - strand, within GFF6573 at 14.631 kb on - strand, within GFF6573 at 14.631 kb on - strand, within GFF6573 at 14.718 kb on - strand, within GFF6573 at 14.718 kb on - strand, within GFF6573 at 14.718 kb on - strand, within GFF6573 at 14.718 kb on - strand, within GFF6573
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,329 + GFF6572 0.11 -0.7 13,330 - GFF6572 0.11 -1.8 13,330 - GFF6572 0.11 -0.1 13,347 + GFF6572 0.13 +0.2 13,348 - GFF6572 0.13 +0.4 13,348 - GFF6572 0.13 -0.7 13,434 + GFF6572 0.21 -0.1 13,434 + GFF6572 0.21 -0.7 13,434 + GFF6572 0.21 -0.3 13,435 - GFF6572 0.21 -0.1 13,435 - GFF6572 0.21 -0.6 13,435 - GFF6572 0.21 +0.2 13,659 + GFF6572 0.44 -2.0 13,659 + GFF6572 0.44 -0.6 13,660 - GFF6572 0.44 +0.0 13,762 + GFF6572 0.54 -0.8 13,762 + GFF6572 0.54 -0.3 13,762 + GFF6572 0.54 +0.1 13,860 + GFF6572 0.63 +0.1 13,860 + GFF6572 0.63 +0.0 13,860 + GFF6572 0.63 +0.2 13,861 - GFF6572 0.64 +0.2 13,861 - GFF6572 0.64 +0.7 13,861 - GFF6572 0.64 -0.1 13,869 + GFF6572 0.64 -0.4 13,870 - GFF6572 0.64 -0.7 13,914 + GFF6572 0.69 -1.1 13,914 + GFF6572 0.69 +1.0 13,914 + GFF6572 0.69 +0.2 13,915 - GFF6572 0.69 -1.4 13,915 - GFF6572 0.69 -2.0 13,915 - GFF6572 0.69 -0.2 14,209 + -0.3 14,210 - -0.2 14,210 - +1.2 14,210 - +0.0 14,282 + -1.3 14,282 + -0.1 14,282 + -2.3 14,282 + -1.0 14,282 + +0.1 14,282 + -0.4 14,282 + -0.8 14,282 + -1.2 14,283 - +1.4 14,283 - -0.6 14,283 - -0.5 14,550 - GFF6573 0.46 -1.1 14,550 - GFF6573 0.46 -0.6 14,631 - GFF6573 0.58 -0.1 14,631 - GFF6573 0.58 -0.9 14,718 - GFF6573 0.70 -0.1 14,718 - GFF6573 0.70 +0.2 14,718 - GFF6573 0.70 -0.8 14,718 - GFF6573 0.70 -0.9
Or see this region's nucleotide sequence