Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6503 and GFF6504 overlap by 4 nucleotides GFF6504 and GFF6505 are separated by 4 nucleotides GFF6505 and GFF6506 are separated by 112 nucleotides
GFF6503 - no description, at 105 to 368
GFF6503
GFF6504 - no description, at 365 to 1,111
GFF6504
GFF6505 - no description, at 1,116 to 1,529
GFF6505
GFF6506 - DNA-binding protein HU-beta, at 1,642 to 1,953
GFF6506
Position (kb) 0
1
2 Strain fitness (log2 ratio) -1
0
1
2 at 0.071 kb on + strand at 0.071 kb on + strand at 0.094 kb on - strand at 0.111 kb on + strand at 0.191 kb on - strand, within GFF6503 at 0.191 kb on - strand, within GFF6503 at 0.191 kb on - strand, within GFF6503 at 0.264 kb on + strand, within GFF6503 at 0.264 kb on + strand, within GFF6503 at 0.264 kb on + strand, within GFF6503 at 0.265 kb on - strand, within GFF6503 at 0.265 kb on - strand, within GFF6503 at 0.265 kb on - strand, within GFF6503 at 0.333 kb on + strand, within GFF6503 at 0.333 kb on + strand, within GFF6503 at 0.333 kb on + strand, within GFF6503 at 0.334 kb on - strand, within GFF6503 at 0.334 kb on - strand, within GFF6503 at 0.334 kb on - strand, within GFF6503 at 0.366 kb on + strand at 0.366 kb on + strand at 0.367 kb on - strand at 0.367 kb on - strand at 0.555 kb on + strand, within GFF6504 at 0.556 kb on - strand, within GFF6504 at 0.556 kb on - strand, within GFF6504 at 0.556 kb on - strand, within GFF6504 at 0.657 kb on + strand, within GFF6504 at 0.657 kb on + strand, within GFF6504 at 0.657 kb on + strand, within GFF6504 at 0.658 kb on - strand, within GFF6504 at 0.658 kb on - strand, within GFF6504 at 0.779 kb on - strand, within GFF6504 at 0.795 kb on + strand, within GFF6504 at 0.795 kb on + strand, within GFF6504 at 0.796 kb on - strand, within GFF6504 at 0.796 kb on - strand, within GFF6504 at 0.796 kb on - strand, within GFF6504 at 0.796 kb on - strand, within GFF6504 at 0.796 kb on - strand, within GFF6504 at 0.932 kb on + strand, within GFF6504 at 0.933 kb on - strand, within GFF6504 at 0.987 kb on - strand, within GFF6504 at 0.987 kb on - strand, within GFF6504 at 0.988 kb on + strand, within GFF6504 at 0.988 kb on + strand, within GFF6504 at 0.988 kb on + strand, within GFF6504 at 0.988 kb on + strand, within GFF6504 at 0.988 kb on + strand, within GFF6504 at 0.988 kb on + strand, within GFF6504 at 0.988 kb on + strand, within GFF6504 at 0.989 kb on - strand, within GFF6504 at 0.989 kb on - strand, within GFF6504 at 0.989 kb on - strand, within GFF6504 at 0.989 kb on - strand, within GFF6504 at 0.989 kb on - strand, within GFF6504 at 0.989 kb on - strand, within GFF6504 at 0.994 kb on - strand, within GFF6504 at 1.045 kb on + strand at 1.046 kb on - strand at 1.099 kb on + strand at 1.339 kb on - strand, within GFF6505 at 1.339 kb on - strand, within GFF6505 at 1.582 kb on - strand at 1.596 kb on - strand at 1.613 kb on + strand at 1.643 kb on + strand at 1.644 kb on - strand at 1.644 kb on - strand at 1.644 kb on - strand at 1.906 kb on + strand, within GFF6506 at 1.906 kb on + strand, within GFF6506 at 1.906 kb on + strand, within GFF6506 at 1.906 kb on + strand, within GFF6506 at 1.907 kb on - strand, within GFF6506 at 1.907 kb on - strand, within GFF6506 at 1.972 kb on + strand at 1.973 kb on - strand at 1.990 kb on + strand at 2.003 kb on + strand at 2.003 kb on + strand at 2.004 kb on - strand at 2.004 kb on - strand at 2.004 kb on - strand at 2.105 kb on + strand at 2.105 kb on + strand at 2.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 71 + -1.7 71 + -0.2 94 - -0.1 111 + +0.8 191 - GFF6503 0.33 +0.1 191 - GFF6503 0.33 -0.4 191 - GFF6503 0.33 -1.0 264 + GFF6503 0.60 -0.7 264 + GFF6503 0.60 -0.8 264 + GFF6503 0.60 +1.6 265 - GFF6503 0.61 -0.4 265 - GFF6503 0.61 -0.5 265 - GFF6503 0.61 -0.5 333 + GFF6503 0.86 -0.6 333 + GFF6503 0.86 -0.2 333 + GFF6503 0.86 -0.3 334 - GFF6503 0.87 -0.8 334 - GFF6503 0.87 +0.5 334 - GFF6503 0.87 -1.6 366 + -0.6 366 + +0.0 367 - +0.2 367 - -0.3 555 + GFF6504 0.25 +1.0 556 - GFF6504 0.26 -0.3 556 - GFF6504 0.26 -0.3 556 - GFF6504 0.26 -0.0 657 + GFF6504 0.39 +1.5 657 + GFF6504 0.39 -1.1 657 + GFF6504 0.39 +2.1 658 - GFF6504 0.39 +0.3 658 - GFF6504 0.39 -0.1 779 - GFF6504 0.55 -0.4 795 + GFF6504 0.58 +0.5 795 + GFF6504 0.58 +1.1 796 - GFF6504 0.58 -0.7 796 - GFF6504 0.58 -0.4 796 - GFF6504 0.58 +0.1 796 - GFF6504 0.58 +0.3 796 - GFF6504 0.58 -1.0 932 + GFF6504 0.76 +1.0 933 - GFF6504 0.76 +0.4 987 - GFF6504 0.83 -0.3 987 - GFF6504 0.83 -0.2 988 + GFF6504 0.83 -0.1 988 + GFF6504 0.83 -0.2 988 + GFF6504 0.83 +0.8 988 + GFF6504 0.83 +0.2 988 + GFF6504 0.83 +1.2 988 + GFF6504 0.83 -0.2 988 + GFF6504 0.83 -0.2 989 - GFF6504 0.84 +0.0 989 - GFF6504 0.84 -0.5 989 - GFF6504 0.84 +1.5 989 - GFF6504 0.84 -0.1 989 - GFF6504 0.84 -0.1 989 - GFF6504 0.84 -0.5 994 - GFF6504 0.84 +0.3 1,045 + +0.4 1,046 - +0.6 1,099 + -0.5 1,339 - GFF6505 0.54 +0.0 1,339 - GFF6505 0.54 +1.0 1,582 - -1.2 1,596 - +0.2 1,613 + -0.8 1,643 + -0.2 1,644 - -0.3 1,644 - +0.3 1,644 - -0.2 1,906 + GFF6506 0.85 -0.3 1,906 + GFF6506 0.85 +0.1 1,906 + GFF6506 0.85 -0.4 1,906 + GFF6506 0.85 -0.5 1,907 - GFF6506 0.85 -1.2 1,907 - GFF6506 0.85 -0.3 1,972 + -0.5 1,973 - +1.6 1,990 + +1.3 2,003 + -0.4 2,003 + +0.7 2,004 - +0.4 2,004 - +0.3 2,004 - +0.8 2,105 + -0.4 2,105 + -1.1 2,106 - -1.4
Or see this region's nucleotide sequence