Strain Fitness in Variovorax sp. SCN45 around GFF6503

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6503 and GFF6504 overlap by 4 nucleotidesGFF6504 and GFF6505 are separated by 4 nucleotides GFF6503 - no description, at 105 to 368 GFF6503 GFF6504 - no description, at 365 to 1,111 GFF6504 GFF6505 - no description, at 1,116 to 1,529 GFF6505 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1 2at 0.071 kb on + strandat 0.071 kb on + strandat 0.094 kb on - strandat 0.111 kb on + strandat 0.191 kb on - strand, within GFF6503at 0.191 kb on - strand, within GFF6503at 0.191 kb on - strand, within GFF6503at 0.264 kb on + strand, within GFF6503at 0.264 kb on + strand, within GFF6503at 0.264 kb on + strand, within GFF6503at 0.265 kb on - strand, within GFF6503at 0.265 kb on - strand, within GFF6503at 0.265 kb on - strand, within GFF6503at 0.333 kb on + strand, within GFF6503at 0.333 kb on + strand, within GFF6503at 0.333 kb on + strand, within GFF6503at 0.334 kb on - strand, within GFF6503at 0.334 kb on - strand, within GFF6503at 0.334 kb on - strand, within GFF6503at 0.366 kb on + strandat 0.366 kb on + strandat 0.367 kb on - strandat 0.367 kb on - strandat 0.555 kb on + strand, within GFF6504at 0.556 kb on - strand, within GFF6504at 0.556 kb on - strand, within GFF6504at 0.556 kb on - strand, within GFF6504at 0.657 kb on + strand, within GFF6504at 0.657 kb on + strand, within GFF6504at 0.657 kb on + strand, within GFF6504at 0.658 kb on - strand, within GFF6504at 0.658 kb on - strand, within GFF6504at 0.779 kb on - strand, within GFF6504at 0.795 kb on + strand, within GFF6504at 0.795 kb on + strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.796 kb on - strand, within GFF6504at 0.932 kb on + strand, within GFF6504at 0.933 kb on - strand, within GFF6504at 0.987 kb on - strand, within GFF6504at 0.987 kb on - strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.988 kb on + strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.989 kb on - strand, within GFF6504at 0.994 kb on - strand, within GFF6504at 1.045 kb on + strandat 1.046 kb on - strandat 1.099 kb on + strandat 1.339 kb on - strand, within GFF6505at 1.339 kb on - strand, within GFF6505

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
71 + -1.7
71 + -0.2
94 - -0.1
111 + +0.8
191 - GFF6503 0.33 +0.1
191 - GFF6503 0.33 -0.4
191 - GFF6503 0.33 -1.0
264 + GFF6503 0.60 -0.7
264 + GFF6503 0.60 -0.8
264 + GFF6503 0.60 +1.6
265 - GFF6503 0.61 -0.4
265 - GFF6503 0.61 -0.5
265 - GFF6503 0.61 -0.5
333 + GFF6503 0.86 -0.6
333 + GFF6503 0.86 -0.2
333 + GFF6503 0.86 -0.3
334 - GFF6503 0.87 -0.8
334 - GFF6503 0.87 +0.5
334 - GFF6503 0.87 -1.6
366 + -0.6
366 + +0.0
367 - +0.2
367 - -0.3
555 + GFF6504 0.25 +1.0
556 - GFF6504 0.26 -0.3
556 - GFF6504 0.26 -0.3
556 - GFF6504 0.26 -0.0
657 + GFF6504 0.39 +1.5
657 + GFF6504 0.39 -1.1
657 + GFF6504 0.39 +2.1
658 - GFF6504 0.39 +0.3
658 - GFF6504 0.39 -0.1
779 - GFF6504 0.55 -0.4
795 + GFF6504 0.58 +0.5
795 + GFF6504 0.58 +1.1
796 - GFF6504 0.58 -0.7
796 - GFF6504 0.58 -0.4
796 - GFF6504 0.58 +0.1
796 - GFF6504 0.58 +0.3
796 - GFF6504 0.58 -1.0
932 + GFF6504 0.76 +1.0
933 - GFF6504 0.76 +0.4
987 - GFF6504 0.83 -0.3
987 - GFF6504 0.83 -0.2
988 + GFF6504 0.83 -0.1
988 + GFF6504 0.83 -0.2
988 + GFF6504 0.83 +0.8
988 + GFF6504 0.83 +0.2
988 + GFF6504 0.83 +1.2
988 + GFF6504 0.83 -0.2
988 + GFF6504 0.83 -0.2
989 - GFF6504 0.84 +0.0
989 - GFF6504 0.84 -0.5
989 - GFF6504 0.84 +1.5
989 - GFF6504 0.84 -0.1
989 - GFF6504 0.84 -0.1
989 - GFF6504 0.84 -0.5
994 - GFF6504 0.84 +0.3
1,045 + +0.4
1,046 - +0.6
1,099 + -0.5
1,339 - GFF6505 0.54 +0.0
1,339 - GFF6505 0.54 +1.0

Or see this region's nucleotide sequence