Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF637 and GFF638 are separated by 7 nucleotides GFF638 and GFF639 are separated by 118 nucleotides GFF639 and GFF640 are separated by 7 nucleotides
GFF637 - Two-component system sensor histidine kinase/response regulator hybrid, at 686,771 to 690,163
GFF637
GFF638 - Two-component transcriptional response regulator, LuxR family, at 690,171 to 691,043
GFF638
GFF639 - hypothetical protein, at 691,162 to 691,932
GFF639
GFF640 - no description, at 691,940 to 692,419
GFF640
Position (kb) 690
691
692 Strain fitness (log2 ratio) -1
0
1
2 at 689.445 kb on - strand, within GFF637 at 689.748 kb on + strand, within GFF637 at 689.748 kb on + strand, within GFF637 at 689.749 kb on - strand, within GFF637 at 689.749 kb on - strand, within GFF637 at 689.749 kb on - strand, within GFF637 at 689.749 kb on - strand, within GFF637 at 690.255 kb on + strand at 690.325 kb on + strand, within GFF638 at 690.480 kb on + strand, within GFF638 at 690.480 kb on + strand, within GFF638 at 690.480 kb on + strand, within GFF638 at 690.481 kb on - strand, within GFF638 at 691.082 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.106 kb on + strand at 691.204 kb on + strand at 691.204 kb on + strand at 691.204 kb on + strand at 691.205 kb on - strand at 691.205 kb on - strand at 691.310 kb on - strand, within GFF639 at 691.336 kb on + strand, within GFF639 at 691.336 kb on + strand, within GFF639 at 691.337 kb on - strand, within GFF639 at 691.337 kb on - strand, within GFF639 at 691.351 kb on + strand, within GFF639 at 691.351 kb on + strand, within GFF639 at 691.352 kb on - strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.447 kb on + strand, within GFF639 at 691.450 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.615 kb on + strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.616 kb on - strand, within GFF639 at 691.636 kb on + strand, within GFF639 at 691.636 kb on + strand, within GFF639 at 691.636 kb on + strand, within GFF639 at 691.637 kb on - strand, within GFF639 at 691.637 kb on - strand, within GFF639 at 691.735 kb on + strand, within GFF639 at 691.735 kb on + strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.736 kb on - strand, within GFF639 at 691.786 kb on + strand, within GFF639 at 691.897 kb on + strand at 691.898 kb on - strand at 691.898 kb on - strand at 691.900 kb on + strand at 691.900 kb on + strand at 692.005 kb on - strand, within GFF640 at 692.005 kb on - strand, within GFF640
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 689,445 - GFF637 0.79 -0.1 689,748 + GFF637 0.88 +0.4 689,748 + GFF637 0.88 +1.1 689,749 - GFF637 0.88 +0.4 689,749 - GFF637 0.88 +0.1 689,749 - GFF637 0.88 +0.0 689,749 - GFF637 0.88 +0.4 690,255 + +0.2 690,325 + GFF638 0.18 -1.1 690,480 + GFF638 0.35 -0.1 690,480 + GFF638 0.35 +0.7 690,480 + GFF638 0.35 +0.7 690,481 - GFF638 0.36 -0.2 691,082 - +0.2 691,105 - -0.2 691,105 - -0.6 691,105 - +0.2 691,105 - -0.1 691,106 + -1.1 691,204 + -0.3 691,204 + -0.1 691,204 + -0.6 691,205 - +0.5 691,205 - -0.4 691,310 - GFF639 0.19 -0.3 691,336 + GFF639 0.23 -0.1 691,336 + GFF639 0.23 +1.5 691,337 - GFF639 0.23 -0.4 691,337 - GFF639 0.23 +0.0 691,351 + GFF639 0.25 -0.2 691,351 + GFF639 0.25 +0.5 691,352 - GFF639 0.25 +0.2 691,447 + GFF639 0.37 +0.6 691,447 + GFF639 0.37 -0.7 691,447 + GFF639 0.37 -0.1 691,447 + GFF639 0.37 -1.4 691,450 + GFF639 0.37 -0.4 691,615 + GFF639 0.59 -0.1 691,615 + GFF639 0.59 +0.1 691,615 + GFF639 0.59 -0.4 691,615 + GFF639 0.59 -0.5 691,615 + GFF639 0.59 -0.9 691,615 + GFF639 0.59 +0.0 691,616 - GFF639 0.59 +1.0 691,616 - GFF639 0.59 -0.2 691,616 - GFF639 0.59 +1.9 691,616 - GFF639 0.59 -0.3 691,636 + GFF639 0.61 +0.5 691,636 + GFF639 0.61 +0.9 691,636 + GFF639 0.61 +1.5 691,637 - GFF639 0.62 -0.4 691,637 - GFF639 0.62 -0.1 691,735 + GFF639 0.74 -1.1 691,735 + GFF639 0.74 +0.1 691,736 - GFF639 0.74 +1.4 691,736 - GFF639 0.74 +0.3 691,736 - GFF639 0.74 -0.1 691,736 - GFF639 0.74 +0.6 691,786 + GFF639 0.81 +0.4 691,897 + +0.1 691,898 - -1.3 691,898 - +0.3 691,900 + -0.4 691,900 + +0.6 692,005 - GFF640 0.14 +0.2 692,005 - GFF640 0.14 +0.6
Or see this region's nucleotide sequence