Strain Fitness in Variovorax sp. SCN45 around GFF6303

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6301 and GFF6302 are separated by 126 nucleotidesGFF6302 and GFF6303 are separated by 46 nucleotidesGFF6303 and GFF6304 are separated by 56 nucleotides GFF6301 - Pyruvate:Oxaloacetate transcarboxylase domain protein, at 90,255 to 91,193 GFF6301 GFF6302 - Transcriptional regulator, IclR family, at 91,320 to 92,060 GFF6302 GFF6303 - BUG/TctC family periplasmic protein, at 92,107 to 93,078 GFF6303 GFF6304 - Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57), at 93,135 to 94,112 GFF6304 Position (kb) 92 93 94Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 91.271 kb on - strandat 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.473 kb on + strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.474 kb on - strand, within GFF6302at 91.548 kb on + strand, within GFF6302at 91.548 kb on + strand, within GFF6302at 91.549 kb on - strand, within GFF6302at 91.549 kb on - strand, within GFF6302at 91.549 kb on - strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.587 kb on + strand, within GFF6302at 91.588 kb on - strand, within GFF6302at 91.588 kb on - strand, within GFF6302at 91.588 kb on - strand, within GFF6302at 91.588 kb on - strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.668 kb on + strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.669 kb on - strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.860 kb on + strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.861 kb on - strand, within GFF6302at 91.998 kb on + strandat 91.998 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.010 kb on + strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.011 kb on - strandat 92.173 kb on + strandat 92.173 kb on + strandat 92.173 kb on + strandat 92.174 kb on - strandat 92.174 kb on - strandat 92.225 kb on + strand, within GFF6303at 92.225 kb on + strand, within GFF6303at 92.225 kb on + strand, within GFF6303at 92.225 kb on + strand, within GFF6303at 92.225 kb on + strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.226 kb on - strand, within GFF6303at 92.318 kb on + strand, within GFF6303at 92.318 kb on + strand, within GFF6303at 92.318 kb on + strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.319 kb on - strand, within GFF6303at 92.349 kb on - strand, within GFF6303at 92.528 kb on + strand, within GFF6303at 92.529 kb on - strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.615 kb on + strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.616 kb on - strand, within GFF6303at 92.754 kb on - strand, within GFF6303at 92.769 kb on - strand, within GFF6303at 93.212 kb on - strandat 93.212 kb on - strandat 93.379 kb on + strand, within GFF6304at 93.379 kb on + strand, within GFF6304at 93.379 kb on + strand, within GFF6304at 93.379 kb on + strand, within GFF6304at 93.379 kb on + strand, within GFF6304at 93.379 kb on + strand, within GFF6304at 93.379 kb on + strand, within GFF6304at 93.379 kb on + strand, within GFF6304at 93.379 kb on + strand, within GFF6304at 93.379 kb on + strand, within GFF6304at 93.379 kb on + strand, within GFF6304at 93.380 kb on - strand, within GFF6304at 93.380 kb on - strand, within GFF6304at 93.380 kb on - strand, within GFF6304at 93.380 kb on - strand, within GFF6304at 93.380 kb on - strand, within GFF6304at 93.380 kb on - strand, within GFF6304at 93.380 kb on - strand, within GFF6304at 93.380 kb on - strand, within GFF6304at 93.380 kb on - strand, within GFF6304at 93.505 kb on + strand, within GFF6304at 93.506 kb on - strand, within GFF6304at 93.598 kb on + strand, within GFF6304at 93.599 kb on - strand, within GFF6304at 93.599 kb on - strand, within GFF6304at 93.619 kb on + strand, within GFF6304at 93.619 kb on + strand, within GFF6304at 93.619 kb on + strand, within GFF6304at 93.619 kb on + strand, within GFF6304at 93.619 kb on + strand, within GFF6304at 93.620 kb on - strand, within GFF6304at 93.620 kb on - strand, within GFF6304at 93.620 kb on - strand, within GFF6304at 93.620 kb on - strand, within GFF6304at 93.628 kb on + strand, within GFF6304at 93.628 kb on + strand, within GFF6304at 93.628 kb on + strand, within GFF6304at 93.628 kb on + strand, within GFF6304at 93.629 kb on - strand, within GFF6304at 93.629 kb on - strand, within GFF6304at 93.629 kb on - strand, within GFF6304at 93.629 kb on - strand, within GFF6304at 93.629 kb on - strand, within GFF6304at 93.793 kb on + strand, within GFF6304at 93.793 kb on + strand, within GFF6304at 93.794 kb on - strand, within GFF6304at 93.794 kb on - strand, within GFF6304at 93.850 kb on + strand, within GFF6304at 93.851 kb on - strand, within GFF6304at 93.851 kb on - strand, within GFF6304at 93.865 kb on + strand, within GFF6304at 93.874 kb on + strand, within GFF6304at 93.875 kb on - strand, within GFF6304at 93.875 kb on - strand, within GFF6304at 93.875 kb on - strand, within GFF6304at 93.875 kb on - strand, within GFF6304at 94.021 kb on + strandat 94.021 kb on + strandat 94.021 kb on + strandat 94.021 kb on + strandat 94.021 kb on + strandat 94.022 kb on - strandat 94.022 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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91,271 - +0.9
91,473 + GFF6302 0.21 +0.4
91,473 + GFF6302 0.21 +0.2
91,473 + GFF6302 0.21 -0.4
91,473 + GFF6302 0.21 -1.8
91,473 + GFF6302 0.21 -0.4
91,473 + GFF6302 0.21 +0.1
91,473 + GFF6302 0.21 +0.5
91,473 + GFF6302 0.21 -0.2
91,473 + GFF6302 0.21 -0.5
91,474 - GFF6302 0.21 -0.5
91,474 - GFF6302 0.21 -0.4
91,474 - GFF6302 0.21 +0.5
91,474 - GFF6302 0.21 +0.8
91,474 - GFF6302 0.21 -1.7
91,474 - GFF6302 0.21 +0.0
91,474 - GFF6302 0.21 +0.5
91,474 - GFF6302 0.21 -0.5
91,474 - GFF6302 0.21 -0.3
91,474 - GFF6302 0.21 +0.4
91,474 - GFF6302 0.21 -1.8
91,474 - GFF6302 0.21 -0.4
91,548 + GFF6302 0.31 +0.2
91,548 + GFF6302 0.31 -0.3
91,549 - GFF6302 0.31 -0.5
91,549 - GFF6302 0.31 +0.5
91,549 - GFF6302 0.31 -0.7
91,587 + GFF6302 0.36 +0.6
91,587 + GFF6302 0.36 +1.1
91,587 + GFF6302 0.36 -0.1
91,587 + GFF6302 0.36 -2.0
91,587 + GFF6302 0.36 +1.3
91,588 - GFF6302 0.36 +0.8
91,588 - GFF6302 0.36 +0.0
91,588 - GFF6302 0.36 +0.9
91,588 - GFF6302 0.36 -0.7
91,668 + GFF6302 0.47 -0.8
91,668 + GFF6302 0.47 -0.3
91,668 + GFF6302 0.47 -0.2
91,668 + GFF6302 0.47 +0.4
91,668 + GFF6302 0.47 +0.2
91,668 + GFF6302 0.47 +0.0
91,669 - GFF6302 0.47 -0.6
91,669 - GFF6302 0.47 -0.5
91,669 - GFF6302 0.47 +1.5
91,669 - GFF6302 0.47 -0.2
91,669 - GFF6302 0.47 -1.0
91,669 - GFF6302 0.47 -1.2
91,669 - GFF6302 0.47 -1.1
91,669 - GFF6302 0.47 +0.4
91,860 + GFF6302 0.73 -1.1
91,860 + GFF6302 0.73 -0.0
91,860 + GFF6302 0.73 +0.8
91,860 + GFF6302 0.73 +0.2
91,860 + GFF6302 0.73 -0.7
91,860 + GFF6302 0.73 -0.4
91,860 + GFF6302 0.73 -1.7
91,861 - GFF6302 0.73 -0.9
91,861 - GFF6302 0.73 +0.3
91,861 - GFF6302 0.73 +0.4
91,861 - GFF6302 0.73 -0.1
91,861 - GFF6302 0.73 +0.1
91,998 + -0.0
91,998 + +0.6
92,010 + +0.6
92,010 + +0.3
92,010 + -0.1
92,010 + +0.2
92,010 + +0.3
92,010 + +0.4
92,010 + -0.4
92,010 + -1.0
92,010 + -0.3
92,011 - +1.1
92,011 - -0.1
92,011 - +0.0
92,011 - -0.3
92,011 - +0.1
92,011 - +0.1
92,173 + -1.1
92,173 + +1.1
92,173 + -0.7
92,174 - -0.4
92,174 - -1.1
92,225 + GFF6303 0.12 -0.4
92,225 + GFF6303 0.12 +0.9
92,225 + GFF6303 0.12 -0.2
92,225 + GFF6303 0.12 +1.3
92,225 + GFF6303 0.12 -0.9
92,226 - GFF6303 0.12 +0.5
92,226 - GFF6303 0.12 -0.4
92,226 - GFF6303 0.12 +3.1
92,226 - GFF6303 0.12 +0.6
92,226 - GFF6303 0.12 -0.5
92,226 - GFF6303 0.12 -0.7
92,226 - GFF6303 0.12 -0.7
92,318 + GFF6303 0.22 +0.3
92,318 + GFF6303 0.22 -0.6
92,318 + GFF6303 0.22 -0.9
92,319 - GFF6303 0.22 -1.2
92,319 - GFF6303 0.22 +0.1
92,319 - GFF6303 0.22 -1.0
92,319 - GFF6303 0.22 +1.1
92,319 - GFF6303 0.22 +0.3
92,319 - GFF6303 0.22 -0.7
92,319 - GFF6303 0.22 -1.1
92,349 - GFF6303 0.25 -1.1
92,528 + GFF6303 0.43 +0.3
92,529 - GFF6303 0.43 -0.7
92,615 + GFF6303 0.52 -0.6
92,615 + GFF6303 0.52 -0.7
92,615 + GFF6303 0.52 -0.2
92,615 + GFF6303 0.52 -1.3
92,615 + GFF6303 0.52 -2.9
92,615 + GFF6303 0.52 +0.4
92,615 + GFF6303 0.52 +0.5
92,615 + GFF6303 0.52 -0.1
92,615 + GFF6303 0.52 -0.7
92,615 + GFF6303 0.52 -1.8
92,615 + GFF6303 0.52 +1.1
92,615 + GFF6303 0.52 -0.3
92,615 + GFF6303 0.52 +0.7
92,616 - GFF6303 0.52 -0.9
92,616 - GFF6303 0.52 +0.6
92,616 - GFF6303 0.52 -0.1
92,616 - GFF6303 0.52 -0.2
92,616 - GFF6303 0.52 -0.0
92,616 - GFF6303 0.52 -0.6
92,616 - GFF6303 0.52 -0.2
92,616 - GFF6303 0.52 -0.6
92,616 - GFF6303 0.52 +1.4
92,754 - GFF6303 0.67 -0.4
92,769 - GFF6303 0.68 -0.2
93,212 - -0.6
93,212 - -0.7
93,379 + GFF6304 0.25 +1.1
93,379 + GFF6304 0.25 +0.4
93,379 + GFF6304 0.25 -0.2
93,379 + GFF6304 0.25 +0.7
93,379 + GFF6304 0.25 -0.0
93,379 + GFF6304 0.25 -1.9
93,379 + GFF6304 0.25 -0.4
93,379 + GFF6304 0.25 -0.7
93,379 + GFF6304 0.25 -0.5
93,379 + GFF6304 0.25 +0.4
93,379 + GFF6304 0.25 -0.4
93,380 - GFF6304 0.25 +0.1
93,380 - GFF6304 0.25 -0.9
93,380 - GFF6304 0.25 +0.8
93,380 - GFF6304 0.25 +0.8
93,380 - GFF6304 0.25 -1.1
93,380 - GFF6304 0.25 +0.1
93,380 - GFF6304 0.25 +0.4
93,380 - GFF6304 0.25 -0.6
93,380 - GFF6304 0.25 -1.1
93,505 + GFF6304 0.38 -0.4
93,506 - GFF6304 0.38 -0.7
93,598 + GFF6304 0.47 +0.1
93,599 - GFF6304 0.47 -0.9
93,599 - GFF6304 0.47 +1.3
93,619 + GFF6304 0.49 -0.5
93,619 + GFF6304 0.49 +0.2
93,619 + GFF6304 0.49 -0.0
93,619 + GFF6304 0.49 +1.0
93,619 + GFF6304 0.49 -0.1
93,620 - GFF6304 0.50 +0.0
93,620 - GFF6304 0.50 -0.4
93,620 - GFF6304 0.50 +0.8
93,620 - GFF6304 0.50 -0.4
93,628 + GFF6304 0.50 -0.4
93,628 + GFF6304 0.50 -1.1
93,628 + GFF6304 0.50 -1.1
93,628 + GFF6304 0.50 -0.7
93,629 - GFF6304 0.51 +0.4
93,629 - GFF6304 0.51 -0.2
93,629 - GFF6304 0.51 -0.6
93,629 - GFF6304 0.51 +0.1
93,629 - GFF6304 0.51 -0.7
93,793 + GFF6304 0.67 -0.3
93,793 + GFF6304 0.67 -0.4
93,794 - GFF6304 0.67 +1.0
93,794 - GFF6304 0.67 -0.5
93,850 + GFF6304 0.73 -1.4
93,851 - GFF6304 0.73 +0.0
93,851 - GFF6304 0.73 -1.0
93,865 + GFF6304 0.75 -1.2
93,874 + GFF6304 0.76 -0.2
93,875 - GFF6304 0.76 -0.8
93,875 - GFF6304 0.76 -0.2
93,875 - GFF6304 0.76 -0.3
93,875 - GFF6304 0.76 -1.1
94,021 + +0.3
94,021 + +0.4
94,021 + -0.6
94,021 + -0.6
94,021 + -1.0
94,022 - -0.3
94,022 - -0.5

Or see this region's nucleotide sequence