Strain Fitness in Variovorax sp. SCN45 around GFF6298

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
86,135	+				+0.5
86,135	+				-0.0
86,136	-				-0.8
86,136	-				-0.5
86,189	+				-1.2
86,189	+				-1.1
86,189	+				-0.1
86,189	+				-1.1
86,189	+				-0.2
86,189	+				-1.8
86,189	+				-0.3
86,189	+				-0.1
86,189	+				-1.1
86,189	+				-1.0
86,189	+				-0.2
86,189	+				-0.6
86,189	+				-0.7
86,189	+				-1.4
86,189	+				-1.2
86,189	+				-0.4
86,189	+				-0.2
86,189	+				+0.1
86,189	+				-0.2
86,189	+				-0.1
86,189	+				-0.1
86,189	+				-0.3
86,189	+				-1.2
86,189	+				+0.7
86,189	+				-0.5
86,189	+				-0.6
86,189	+				-0.8
86,189	+				-0.2
86,189	+				+0.3
86,189	+				+0.0
86,189	+				-0.6
86,189	+				-1.4
86,189	+				+0.7
86,189	+				+0.3
86,189	+				-0.1
86,189	+				+0.1
86,189	+				-1.3
86,189	+				-1.3
86,190	-				-0.7
86,190	-				-0.3
86,190	-				+1.4
86,190	-				-0.1
86,190	-				-1.1
86,190	-				-1.1
86,190	-				-1.1
86,190	-				-0.7
86,190	-				-0.9
86,190	-				-1.0
86,190	-				-1.8
86,190	-				+0.5
86,190	-				-0.8
86,190	-				+0.2
86,190	-				+1.1
86,190	-				-1.3
86,190	-				-0.6
86,190	-				-1.1
86,190	-				+0.8
86,190	-				-0.3
86,190	-				-0.1
86,190	-				+0.8
86,190	-				-0.9
86,190	-				-0.1
86,190	-				-1.1
86,190	-				+0.2
86,190	-				-1.0
86,190	-				+0.8
86,190	-				-0.6
86,190	-				-0.1
86,190	-				-0.5
86,190	-				+0.3
86,190	-				+0.6
86,190	-				-0.3
86,190	-				-0.3
86,190	-				+1.4
86,190	-				-0.6
86,190	-				-0.7
86,190	-				-0.4
86,190	-				-1.1
86,190	-				+0.2
86,190	-				+1.3
86,190	-				-2.5
86,190	-				-1.7
86,190	-				-1.0
86,190	-				+0.5
86,190	-				-0.5
86,190	-				+0.3
86,190	-				-0.1
86,190	-				+0.6
86,190	-				-0.2
86,190	-				-0.2
86,190	-				-0.2
86,190	-				+0.1
86,190	-				-0.2
86,190	-				-1.5
86,190	-				+0.2
86,190	-				+0.6
86,190	-				+0.2
86,190	-				+0.1
86,190	-				+0.1
86,190	-				-1.6
86,190	-				+1.1
86,190	-				-2.1
86,190	-				+0.8
86,190	-				-0.7
86,190	-				+0.5
86,192	-				-0.7
86,192	-				-1.9
86,218	+				-1.2
86,219	-				+0.4
86,219	-				-0.2
86,250	+		GFF6296	0.16	-0.9
86,250	+		GFF6296	0.16	-0.2
86,592	+				-1.6
86,592	+				+1.3
86,592	+				+0.2
86,592	+				+0.6
86,592	+				+1.0
86,592	+				-0.8
86,592	+				-2.1
86,592	+				-0.3
86,592	+				+0.3
86,593	-				-0.4
86,593	-				-0.4
86,593	-				-0.1
86,593	-				-0.1
86,593	-				-0.0
86,593	-				-0.1
86,593	-				-0.7
86,593	-				+0.1
86,742	+		GFF6297	0.33	-1.3
86,742	+		GFF6297	0.33	-0.6
86,742	+		GFF6297	0.33	-0.1
86,742	+		GFF6297	0.33	-0.7
86,742	+		GFF6297	0.33	-0.7
86,742	+		GFF6297	0.33	-0.6
86,742	+		GFF6297	0.33	+0.1
86,743	-		GFF6297	0.34	-0.1
86,743	-		GFF6297	0.34	+0.5
86,743	-		GFF6297	0.34	-0.2
86,743	-		GFF6297	0.34	-0.2
86,743	-		GFF6297	0.34	-1.6
86,743	-		GFF6297	0.34	-0.4
86,743	-		GFF6297	0.34	+0.5
86,743	-		GFF6297	0.34	-0.2
86,898	+		GFF6297	0.68	+0.6
86,898	+		GFF6297	0.68	+0.1
86,899	-		GFF6297	0.68	-0.0
86,899	-		GFF6297	0.68	+0.4
86,976	+		GFF6297	0.85	-0.1
87,008	+				+0.1
87,008	+				-0.5
87,008	+				+0.5
87,008	+				-0.3
87,008	+				-0.1
87,008	+				-0.3
87,008	+				-0.1
87,008	+				-1.9
87,008	+				-0.2
87,008	+				+0.1
87,008	+				-0.7
87,008	+				-0.2
87,008	+				-0.6
87,008	+				+0.1
87,009	-				+0.2
87,009	-				-0.2
87,009	-				-0.7
87,009	-				-0.7
87,009	-				+1.2
87,009	-				-0.2
87,009	-				-1.0
87,009	-				+0.1
87,009	-				-0.1
87,009	-				-0.2
87,009	-				-1.0
87,009	-				-0.2
87,009	-				-0.3
87,009	-				-0.0
87,009	-				+0.0
87,009	-				-0.7
87,009	-				-1.1
87,018	+				-0.6
87,018	+				-0.8
87,018	+				-0.4
87,018	+				-1.1
87,019	-				-0.1
87,019	-				+0.2
87,019	-				+0.4
87,019	-				+0.5
87,019	-				-0.1
87,060	+				-0.4
87,060	+				-0.0
87,060	+				-0.1
87,060	+				+0.2
87,060	+				-0.4
87,060	+				-0.2
87,060	+				+0.3
87,060	+				-0.2
87,060	+				+0.1
87,060	+				+0.2
87,061	-				-0.2
87,061	-				+0.9
87,061	-				+0.1
87,061	-				-0.3
87,061	-				-0.3
87,061	-				-2.5
87,061	-				-0.3
87,110	+				+0.2
87,110	+				-0.3
87,110	+				-0.2
87,110	+				-0.2
87,110	+				-0.2
87,110	+				-2.0
87,110	+				-0.7
87,110	+				-0.6
87,110	+				-0.8
87,111	-				+1.2
87,111	-				-0.3
87,111	-				+0.7
87,111	-				+0.1
87,111	-				+0.4
87,111	-				+1.1
87,111	-				-1.0
87,111	-				-1.4
87,111	-				-0.9
87,144	-				-0.5
87,144	-				+0.4
87,215	+		GFF6298	0.11	-0.2
87,215	+		GFF6298	0.11	-0.1
87,215	+		GFF6298	0.11	-0.7
87,215	+		GFF6298	0.11	-0.3
87,215	+		GFF6298	0.11	+2.4
87,215	+		GFF6298	0.11	-0.4
87,216	-		GFF6298	0.12	-0.5
87,216	-		GFF6298	0.12	+0.4
87,216	-		GFF6298	0.12	+0.4
87,216	-		GFF6298	0.12	+1.4
87,216	-		GFF6298	0.12	+1.4
87,418	-		GFF6298	0.33	+0.1
87,418	-		GFF6298	0.33	-0.9
87,418	-		GFF6298	0.33	-1.4
88,048	+				-1.2
88,048	+				-0.8
88,048	+				+1.1
88,048	+				-2.4
88,048	+				-0.4
88,048	+				+0.2
88,048	+				-1.2
88,048	+				-0.7
88,048	+				+1.6
88,048	+				-1.1
88,048	+				+1.7
88,048	+				-0.1
88,048	+				-1.5
88,048	+				+0.5
88,048	+				-0.6
88,048	+				-1.3
88,048	+				-0.1
88,048	+				-0.4
88,048	+				-1.6
88,048	+				-0.6
88,048	+				-0.6
88,048	+				-0.4
88,048	+				-0.1
88,048	+				-0.1
88,048	+				-1.0
88,048	+				-0.2
88,048	+				-0.4
88,048	+				-0.4
88,048	+				-1.3
88,048	+				-0.6
88,049	-				-1.1
88,049	-				-1.1
88,049	-				-1.7
88,049	-				-1.0
88,049	-				-0.5
88,049	-				+0.0
88,049	-				-0.9
88,049	-				-0.2
88,049	-				-0.1
88,049	-				+0.2
88,049	-				-1.4
88,049	-				-0.2
88,049	-				-0.1
88,049	-				-0.6
88,049	-				-0.6
88,049	-				-0.8
88,049	-				+0.1
88,049	-				-2.2
88,049	-				-0.9
88,049	-				+0.3
88,049	-				-1.7
88,049	-				+0.3
88,049	-				-0.1
88,049	-				-0.5
88,049	-				+0.4
88,049	-				+0.9
88,049	-				+0.0
88,050	+				-0.5
88,050	+				-0.6
88,051	-				-1.0
88,051	-				-1.4
88,051	-				-1.1
88,051	-				-1.3
88,088	+				-1.2
88,089	-				-0.3
88,089	-				+0.5
88,151	+				-0.8
88,151	+				-0.7
88,151	+				-1.1
88,151	+				-0.2
88,151	+				+0.2
88,151	+				+0.4
88,151	+				-1.1
88,151	+				-0.6
88,151	+				-0.5
88,151	+				-0.9
88,151	+				-1.2
88,152	-				+0.3
88,152	-				-0.2
88,152	-				-0.7
88,152	-				+0.9
88,152	-				-0.9
88,152	-				-0.4
88,152	-				-0.5
88,152	-				-1.2
88,152	-				-0.5
88,152	-				-0.4
88,152	-				-0.5
88,152	-				-0.4
88,152	-				+0.8
88,152	-				-0.2
88,152	-				+0.7
88,331	+		GFF6299	0.25	+0.8
88,331	+		GFF6299	0.25	-1.2
88,331	+		GFF6299	0.25	+0.5
88,331	+		GFF6299	0.25	-0.5
88,331	+		GFF6299	0.25	-0.6
88,331	+		GFF6299	0.25	-0.0
88,332	-		GFF6299	0.25	+0.3
88,332	-		GFF6299	0.25	-0.7
88,332	-		GFF6299	0.25	-0.5
88,332	-		GFF6299	0.25	-0.2
88,332	-		GFF6299	0.25	-1.2
88,332	-		GFF6299	0.25	+0.6
88,332	-		GFF6299	0.25	-0.3
88,332	-		GFF6299	0.25	+0.7
88,332	-		GFF6299	0.25	-0.6
88,332	-		GFF6299	0.25	+0.5
88,332	-		GFF6299	0.25	+0.1
88,454	+		GFF6299	0.37	-0.6
88,454	+		GFF6299	0.37	-0.1
88,454	+		GFF6299	0.37	-1.2
88,454	+		GFF6299	0.37	+0.4
88,454	+		GFF6299	0.37	-0.4
88,455	-		GFF6299	0.38	-0.0
88,455	-		GFF6299	0.38	-0.8
88,455	-		GFF6299	0.38	+0.0
88,455	-		GFF6299	0.38	-0.7
88,455	-		GFF6299	0.38	-0.4
88,455	-		GFF6299	0.38	+0.3
88,455	-		GFF6299	0.38	-0.9
88,455	-		GFF6299	0.38	-0.1
88,455	-		GFF6299	0.38	+0.0
88,455	-		GFF6299	0.38	-0.2
88,455	-		GFF6299	0.38	+0.1
88,505	+		GFF6299	0.43	-0.4
88,505	+		GFF6299	0.43	-0.4
88,505	+		GFF6299	0.43	-0.4
88,505	+		GFF6299	0.43	+0.0
88,505	+		GFF6299	0.43	-0.3
88,506	-		GFF6299	0.43	+0.2
88,506	-		GFF6299	0.43	+0.2
88,506	-		GFF6299	0.43	-0.4
88,506	-		GFF6299	0.43	-0.5
88,506	-		GFF6299	0.43	-1.1
88,506	-		GFF6299	0.43	-0.4
88,506	-		GFF6299	0.43	-0.2
88,506	-		GFF6299	0.43	-0.9
88,506	-		GFF6299	0.43	-0.5
88,506	-		GFF6299	0.43	+1.1
88,506	-		GFF6299	0.43	-0.1
88,506	-		GFF6299	0.43	+2.1
88,506	-		GFF6299	0.43	+0.1
88,649	+		GFF6299	0.57	-1.4
88,649	+		GFF6299	0.57	-0.4
88,649	+		GFF6299	0.57	-0.1
88,649	+		GFF6299	0.57	-0.8
88,649	+		GFF6299	0.57	+0.0
88,649	+		GFF6299	0.57	-0.6
88,650	-		GFF6299	0.57	-0.7
88,650	-		GFF6299	0.57	+1.4
88,650	-		GFF6299	0.57	-0.3
88,650	-		GFF6299	0.57	-0.0
88,730	+		GFF6299	0.66	-2.5
88,730	+		GFF6299	0.66	+0.0
88,731	-		GFF6299	0.66	-0.4
88,731	-		GFF6299	0.66	-0.2
88,731	-		GFF6299	0.66	-0.9
88,796	+		GFF6299	0.72	+0.9
88,796	+		GFF6299	0.72	+0.1
88,796	+		GFF6299	0.72	-0.1
88,796	+		GFF6299	0.72	-0.2
88,796	+		GFF6299	0.72	-0.1
88,796	+		GFF6299	0.72	-1.5
88,796	+		GFF6299	0.72	-0.1
88,797	-		GFF6299	0.72	+0.7
88,797	-		GFF6299	0.72	+0.1
88,797	-		GFF6299	0.72	-0.5
88,797	-		GFF6299	0.72	-0.2
88,797	-		GFF6299	0.72	+0.3
88,833	+		GFF6299	0.76	-2.5
88,946	+		GFF6299	0.88	+0.2
88,947	-		GFF6299	0.88	+0.1
88,947	-		GFF6299	0.88	-1.3
88,947	-		GFF6299	0.88	-0.4
88,947	-		GFF6299	0.88	-0.6